PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g17410.1.p
Common NameBRADI_4g17410, LOC100823699
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 851aa    MW: 93385.8 Da    PI: 6.9502
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g17410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.7e-24145246199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++a+e+          ++ +++lt +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   +
  Bradi4g17410.1.p 145 FCKTLTASDTSTHGGFSVLRRHADEClppldmsR--QPPTQELTAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--R 233
                       99*****************************733..334459************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++el+v+v+r+
  Bradi4g17410.1.p 234 GENGELRVGVRRA 246
                       49999*****996 PP
2Auxin_resp114.78.1e-38271353183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp  W +SkWrsLk
  Bradi4g17410.1.p 271 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWAESKWRSLK 353
                       89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-42137260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.57E-41140274IPR015300DNA-binding pseudobarrel domain
CDDcd100178.85E-22143245No hitNo description
PfamPF023626.8E-22145246IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928145247IPR003340B3 DNA binding domain
SMARTSM010197.4E-24145247IPR003340B3 DNA binding domain
PfamPF065073.8E-35271353IPR010525Auxin response factor
PROSITE profilePS5174521.254722806IPR000270PB1 domain
SuperFamilySSF542773.47E-10726798No hitNo description
PfamPF023099.2E-8766812IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MSCAAAAAAA AAGGGEGDAA TAAARAGGGG EGEDALFSEL WSACAGPLVT VPKVGDKVFY  60
FPQGHIEQVE ASTNQVAEQR MQLYNLPWKI LCEVMNVELK AESDTDEVYA QLTLLPESKQ  120
EENASTEEVS AAPSAAPVRP RVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSRQP  180
PTQELTAKDL HGAEWRFRHI FRGQPRRHLL QSGWSVFVSA KRLVAGDAFI FLRGENGELR  240
VGVRRAMRQQ TNVPSSVISS HSMHLGVLAT AWHAVNTGTM FTVYYKPRTS PAEFVVPYDR  300
YMESLKRNYS IGMRFKMRFE GEEAPEQRFT GTIVGMGDSD PAGWAESKWR SLKVRWDEAS  360
SIPRPERVSP WQIEPAVSPP PINPLPVPRT KRPRPNVIAS TTDSSTQAKE VAPKVAAETQ  420
QHALQRAFQT QENATPKTGF GDGSELDTTQ KSVLQPSGFE REKNNIPTQI KLGSNGWMQM  480
SRPESYSEML SGFQPPKDVQ NQQGFRSFPE QIAAGHSNFW HTVNAHYQDQ QGSHSTFPGS  540
WSLMPQNTGF GLNKQNYPMM QEVAGLPQRA ANTKFGNGGY AALPGRGFDQ YSTGWFGHMM  600
PSSHMDDTQP RVIKPQPLVV GHGDMQKTKG ASCKLFGIHL DSPAKSEPLK SPPSVAYDGM  660
PHTPGSAELC RMDATEPEKC YDPSKTPKPL DAPYADSVPE KHLSCQQASR NASGKSRGGS  720
ARSCKKVHKQ GIALGRSVDL TKFNGYMELV SELDDMFDFN GDLKSSNKEW MVVYTDHEGD  780
MMLVGDDPWS EFCNIVHKIF IYTREEVQRM APGALNSRSE ESPANSMERG SAAREVRGCL  840
SASSLNSENC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-176193752354Auxin response factor 1
4ldw_A1e-176193752354Auxin response factor 1
4ldw_B1e-176193752354Auxin response factor 1
4ldx_A1e-176193752354Auxin response factor 1
4ldx_B1e-176193752354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390394KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g17410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758384.10.0auxin response factor 23 isoform X2
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLI1ILH10.0I1ILH1_BRADI; Auxin response factor
STRINGBRADI4G17410.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2