PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g16450.3.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRF

Protein Properties

Length: 329aa MW: 35330.3 Da PI: 8.8802

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g16450.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.1	2.8e-22	134	176	3	45
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr+ ++++k+CErH++rgr+rsrk++e Bradi4g16450.3.p 134 EPGRCRRTDGKKWRCSRDSVGDQKYCERHINRGRQRSRKHVEG 176 9***************************************996 PP
2	QLQ	61.8	1.8e-21	79	115	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++aan+PvP+ Ll++i++ Bradi4g16450.3.p 79 GPFTPTQWMELEHQALIYKHIAANAPVPSSLLLPIKR 115 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.8E-13	79	115	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.6E-16	80	113	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.754	80	115	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.23	132	176	IPR014977	WRC domain
Pfam	PF08879	2.1E-19	134	175	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MLSSCGGGGG HPNSPQKHGR CDEQGGQDGY LGLAGASLPP PPSCSFLGST GSSGAQMLSF 60 SSNDAAGASM QGVLARVRGP FTPTQWMELE HQALIYKHIA ANAPVPSSLL LPIKRSLNPW 120 VGWGPFRPGG ADIEPGRCRR TDGKKWRCSR DSVGDQKYCE RHINRGRQRS RKHVEGRKVT 180 PTIAEPAMVV SGGVSSRSHA AWQQQVESLA ANVADPFPRQ SNRELLEKQN VVEQSSVPTP 240 MDPFDFPSSH SSSNRDEVAF SPLKLHHDLG QVFSVYGAGS SSEKGNRSQP QESWSPVTRE 300 TLDDGPLGEV FRSKSCQSPY GASQLTKN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g16450.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577465.2	0.0	growth-regulating factor 8 isoform X2
Swissprot	Q6AWY1	1e-129	GRF8_ORYSJ; Growth-regulating factor 8
TrEMBL	A0A0Q3H452	0.0	A0A0Q3H452_BRADI; Uncharacterized protein
STRING	BRADI4G16450.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	5e-46	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Bradi4g16450.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]