PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g16450.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRF | ||||||||
Protein Properties | Length: 335aa MW: 35892.9 Da PI: 8.8802 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 70 | 2.9e-22 | 140 | 182 | 3 | 45 |
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr+ ++++k+CErH++rgr+rsrk++e Bradi4g16450.2.p 140 EPGRCRRTDGKKWRCSRDSVGDQKYCERHINRGRQRSRKHVEG 182 9***************************************996 PP | |||||||
2 | QLQ | 61.8 | 1.9e-21 | 85 | 121 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++aan+PvP+ Ll++i++ Bradi4g16450.2.p 85 GPFTPTQWMELEHQALIYKHIAANAPVPSSLLLPIKR 121 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.8E-13 | 85 | 121 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.754 | 86 | 121 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.7E-16 | 86 | 119 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.23 | 138 | 182 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-19 | 140 | 181 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MLSSCGGGGG HPNSPQKHGR CDEQGGQDGY LGLAGASLPP PPSCSFLGST GSSGAQMLSF 60 SSNDAAGFGL TSGASMQGVL ARVRGPFTPT QWMELEHQAL IYKHIAANAP VPSSLLLPIK 120 RSLNPWVGWG PFRPGGADIE PGRCRRTDGK KWRCSRDSVG DQKYCERHIN RGRQRSRKHV 180 EGRKVTPTIA EPAMVVSGGV SSRSHAAWQQ QVESLAANVA DPFPRQSNRE LLEKQNVVEQ 240 SSVPTPMDPF DFPSSHSSSN RDEVAFSPLK LHHDLGQVFS VYGAGSSSEK GNRSQPQESW 300 SPVTRETLDD GPLGEVFRSK SCQSPYGASQ LTKN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g16450.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577464.1 | 0.0 | growth-regulating factor 8 isoform X1 | ||||
Swissprot | Q6AWY1 | 1e-134 | GRF8_ORYSJ; Growth-regulating factor 8 | ||||
TrEMBL | A0A0Q3HIP1 | 0.0 | A0A0Q3HIP1_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G16450.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12960 | 27 | 31 | Representative plant | OGRP14689 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 6e-46 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g16450.2.p |
Publications ? help Back to Top | |||
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