PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g16243.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 805aa    MW: 91152.9 Da    PI: 8.3344
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g16243.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.43.1e-2070161289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        Y++YA+  GF +r+++++   ++ge+ +++fvC+  g++++ek++       + +r+++ ++rtgC+a++kvk++  +++ v+++e+eHnH+
  Bradi4g16243.1.p  70 HYQDYARWNGFGMRTDYQRPI-KSGETSRAQFVCYLAGRNKKEKDDpqrpesIVPKRKRNITERTGCQARMKVKLD-GATYIVDQFEEEHNHS 160
                       6***************98887.7888*****************999999999899999******************.9**************8 PP

              FAR1  89 l 89 
                       +
  Bradi4g16243.1.p 161 V 161
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1670162IPR004330FAR1 DNA binding domain
PfamPF105513.4E-10313356IPR018289MULE transposase domain
PROSITE profilePS509668.271534570IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MMGPTHNVPR PDEHIGASTS AADHPLHGSS GERADGDNNE DNDDADDVMS APAKPALSMR  60
FESTAAAKKH YQDYARWNGF GMRTDYQRPI KSGETSRAQF VCYLAGRNKK EKDDPQRPES  120
IVPKRKRNIT ERTGCQARMK VKLDGATYIV DQFEEEHNHS VLKKFDLGKY LRSHRHMPRE  180
EREFVKLLHA CNLRTSQMMQ ILSTLHGKLN DLSYTRTDMA NFRATLRREH CVMDMKYTLR  240
YFKKLKKDDD DFYNFELDDE DRVINLYCWV DAEARRSYKY YNDCISFDTT YLTNKYNMPC  300
APFIGINNHG SLFNSAMDGI APANIITNQD FAMRNAIAEV FPEARHRNCR WHIMKKAQEK  360
LGGFMGRNLE LHAVFEDCVD NSYTPTEFEF KWSAMIEKYQ VQDNEDLASL WENRTSWVPE  420
YFMLNFYPFL QSTQRSEGPS NSIYNFAQQY SAIQAKILGA EKQAEAETAP TVPKKWGFSP  480
IEEQVKLVYT RRMFNRFQEE LQMTSSYHCA WTGQTTFEAI SMTGYSGQYG SRTFRLAADI  540
AAGMYSCECC KSDRDGIVCC HILRVMQQEG VRVLPQHYIL KRWTWNADAI LGPHGTQELN  600
ATQQEMPENS RKLIRYTTMK KGLGDIVKDA CDDQDGTRIV ERHMKAMRSE MASLRKRQKK  660
DARAREVIGM SRKQGIVPQG SASGAAQEGS TSTPGGSATG AATEGSAAEA EGTGDAMRGR  720
ATEETVTDAG SAASLNHAVR DPPITATKGG PREKRYKSPV DIEPKAPKKK GRCSICRNNS  780
PIPLPHELEH IKPTIIAASK KMGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g16243.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231561.10.0protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A0Q3H4220.0A0A0Q3H422_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-76FAR1-related sequence 5