PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g15720.1.p | ||||||||
Common Name | BRADI_4g15720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 258aa MW: 28584.2 Da PI: 4.7344 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.7 | 8.8e-15 | 199 | 235 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg + Tp +Rrgpdg++t CnaCGl++ k+g+ Bradi4g15720.1.p 199 CTNCGERSdaTPKMRRGPDGSRTFCNACGLMWDKTGR 235 **********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 11.713 | 75 | 110 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.1E-6 | 80 | 108 | IPR010399 | Tify domain |
Pfam | PF06203 | 7.8E-8 | 140 | 182 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.576 | 193 | 249 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.5E-5 | 193 | 246 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-8 | 197 | 239 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.0E-13 | 198 | 238 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.8E-12 | 199 | 235 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.89E-12 | 199 | 237 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 199 | 226 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MQQQQPLPPI CATAGADDED PLALDFEFDV VLPDSDDDLF AFTPGFDQVF TDDQTAAAAA 60 PMQQQQEMEV AEAEEQVGEE QLVMGYDGRM FVFDSVQPHK VETILSLLDG QELVPLPAQS 120 TKPQLTYLVQ PVVVPRDFDR PAALSRYRAK RQRKGLEPVV KADYSCRRDV ALRMRRRGGR 180 FVALSAKRTG DSPNELTLCT NCGERSDATP KMRRGPDGSR TFCNACGLMW DKTGRLRETA 240 GNQSCGGGRW CRRSESM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g15720.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024311007.1 | 1e-126 | GATA transcription factor 20-like | ||||
TrEMBL | I1IKY1 | 0.0 | I1IKY1_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G15720.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15880 | 12 | 13 | Representative plant | OGRP17885 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-29 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g15720.1.p |