PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g15566.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 583aa MW: 67997.5 Da PI: 8.9583

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g15566.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.8e-22	37	126	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Yn+YAk+ GFsvr + +++ + ++e ++r+f+Cskeg+r e+ +++ r++ra tr+gCka+l+++++ + w v++++ H+H+l Bradi4g15566.1.p 37 YNSYAKSKGFSVRLDDKEYISGTTELKRRRFCCSKEGYRLEKYFVaKDQIREPRALTRCGCKAMLEIQRQPgTVLWFVKNFVDVHSHPLD 126 *****************99**************9987655789999***************9999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-19	37	127	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.9E-25	248	326	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
LSVCEMDGYN ASLEEMEEYH MMVSQMFGSV EEGYEQYNSY AKSKGFSVRL DDKEYISGTT 60 ELKRRRFCCS KEGYRLEKYF VAKDQIREPR ALTRCGCKAM LEIQRQPGTV LWFVKNFVDV 120 HSHPLDPKQS PFLRSHRRLN NAQKADAIEY GLGGLRTCQI MEVMEKHHGG YDQVGFVSRD 180 LYNFFAKYKK KRILGRDAEF VLNHMRAQVE RDAEFFFKYS TDDEGHLQNI FWADSQSQID 240 YEAFSDLVVF DSTYRVNRYN LPFVPFIGVD HRRSTIVFGV GIVSDETVSS YEWLLQSFVE 300 AMSHKNPRSV ITDGDAAMRK AIKKNMIRHL RNPMLRDFRK LIYRKMGVYE FERSWARFKE 360 KYEITEQAAW MSRMYKLRKR WSAAYTNGRY FLGMQSNQRS ESLNSRLHNH LDRKMSLVDL 420 VEHSEHCMSR IRRNEAELDA KAANSVPFTR IDANPLEKNA ARFYTPKMFR RVRYCICRSS 480 AWEIEEHTER DGLVTYRAAL KEGAEGRSRH VFFVECSFHG SSMNGIFSGC RKLECEGVPC 540 SHIFSLLSFL GVETIPPCCV RIRWTTQAKA AFVSETNANT HV*

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

LSVCEMDGYN ASLEEMEEYH MMVSQMFGSV EEGYEQYNSY AKSKGFSVRL DDKEYISGTT  60
ELKRRRFCCS KEGYRLEKYF VAKDQIREPR ALTRCGCKAM LEIQRQPGTV LWFVKNFVDV  120
HSHPLDPKQS PFLRSHRRLN NAQKADAIEY GLGGLRTCQI MEVMEKHHGG YDQVGFVSRD  180
LYNFFAKYKK KRILGRDAEF VLNHMRAQVE RDAEFFFKYS TDDEGHLQNI FWADSQSQID  240
YEAFSDLVVF DSTYRVNRYN LPFVPFIGVD HRRSTIVFGV GIVSDETVSS YEWLLQSFVE  300
AMSHKNPRSV ITDGDAAMRK AIKKNMIRHL RNPMLRDFRK LIYRKMGVYE FERSWARFKE  360
KYEITEQAAW MSRMYKLRKR WSAAYTNGRY FLGMQSNQRS ESLNSRLHNH LDRKMSLVDL  420
VEHSEHCMSR IRRNEAELDA KAANSVPFTR IDANPLEKNA ARFYTPKMFR RVRYCICRSS  480
AWEIEEHTER DGLVTYRAAL KEGAEGRSRH VFFVECSFHG SSMNGIFSGC RKLECEGVPC  540
SHIFSLLSFL GVETIPPCCV RIRWTTQAKA AFVSETNANT HV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g15566.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185324.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K2CN35	0.0	A0A2K2CN35_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI2G21270.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-85	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi4g15566.1.p