PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g14635.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 548aa    MW: 63313.3 Da    PI: 9.4477
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g14635.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.61e-1326102185
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                       +fYn+YAk++GF +++s+ ++       +++  +C++egk +++ ++  +++r ra++++gCka++ +k + dg   +++++ eH
  Bradi4g14635.1.p  26 EFYNAYAKHTGFGLKRSQRNT-------YRSYIRCTREGKYKKSVRD-GERQRDRASKKIGCKAHMGLKVNGDGCCIIKSIHFEH 102
                       6*************9987444.......68889************99.9999****************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1026103IPR004330FAR1 DNA binding domain
PfamPF105513.4E-15216278IPR018289MULE transposase domain
SMARTSM005750.0017373400IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MQAPELLENL IPVIGQHFST FDEAFEFYNA YAKHTGFGLK RSQRNTYRSY IRCTREGKYK  60
KSVRDGERQR DRASKKIGCK AHMGLKVNGD GCCIIKSIHF EHKPPAVPQP DYIKDLQLSN  120
VKHVNIMSLL TRLSGGRDKL GCHNRDVLNM YIWKAKNARK ESADDVQKLF KFFDDMTTQN  180
ENFYYDVHVD EDNRLNNIFW ANTSCRAAYA DFSDYIAFDT TYKSNKYHLP LAVFVGVSNH  240
LLSSIFGVAL MGDESVDSFK WVFSTFLKCM HGKQPIYKVT AVLNHPLMPT KFEAAWHELV  300
NKYNLHDVNV MVNLWNERKT WVSAYWKDVF CARMTSTQRS ESMNHVLKKG FTKEFAWSRH  360
EFRVLADEAV GIFECECKLW EHTGLFYLHV IAVFEHLRLD EIPRRYILKR YTKNAVTDPV  420
FNRRDYKMMA QDGTSLEYRR TMLFNKAMKT VNKGPAVSDE IPMTNHTEDD TVKEATKMYA  480
HAQPPKVTKT KGSRNKKKDE APAPAPATAS AHPEPELDAN ENPKGQRRTK NVQQMQKEGF  540
AQLTDMP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g14635.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K2CMU20.0A0A2K2CMU2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1640124
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-45FAR1-related sequence 5