PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g14551.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 614aa    MW: 70331.8 Da    PI: 8.7297
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g14551.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.24.1e-1152137188
              FAR1   1 kfYneYAkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       +++n Y+ ++GF +r  +s++        k+    t+++ vC +eg++++++++         + r+gC   +++ +++d+ w++++++leHn
  Bradi4g14551.1.p  52 EYFNLYSWKIGFGIRYGRSHNYkckygpkKDVIYKTMQNIVCGCEGFPTKKNTS---------SVRCGCGTFIRLLRSDDHGWYIKDCKLEHN 135
                       589************8776665567876334444567899*******9997655.........9***************************** PP

              FAR1  87 He 88 
                       H+
  Bradi4g14551.1.p 136 HP 137
                       *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-852137IPR004330FAR1 DNA binding domain
PfamPF105511.9E-18240327IPR018289MULE transposase domain
PROSITE profilePS509669.038515551IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
KKFEIGPLAR PTVPGRASAL ENSLRGFAHR TTDNILCPDI GLCFDSLPEA YEYFNLYSWK  60
IGFGIRYGRS HNYKCKYGPK KDVIYKTMQN IVCGCEGFPT KKNTSSVRCG CGTFIRLLRS  120
DDHGWYIKDC KLEHNHPELV QNLRQNNVPL TKVYNILGTY FGSTDDVPFN KRSLENLCKQ  180
LSKEEANDDV WKTMELFTKM RDDDPSFVYT ADLDSDGRIR TLICVNGKSK LDYRYFGDAI  240
TFDTTYKTNL YGMPFGLFVG VNNHFQSIIF SGVLMRQETI QTFEWIFREF TSLMGGKAPR  300
TILTAMEVAI ERVFPNTTHS WFKWRVLKMA KEKLGSVYNK YSNFKAEFHK LINYSITVVE  360
FESAWEELIE KYELKEHHFL NAVIVGLNHI SMGFFCAKMT STQRSESPNH MLKGYVPPGA  420
PMHLFVKQYN KLIADRISKE DAENQRTRMG GVVLKTGWPI EKHATTIYMS AMLEMFSDNI  480
FDSATYNVIE VAPNKKYLTV HSDASRRQKW SKVHYGITIS DDGGHYQCEC GLAEHMGMLC  540
CHAIRVMLRL GIDKVPDKRW TKEANDVLPH HLAHLPKDRG SLRSQLYHHA SLHVAALELA  600
TIGDKNMSAI IRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g14551.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197126.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024317341.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3L5M10.0A0A0Q3L5M1_BRADI; Uncharacterized protein (Fragment)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-63FAR1-related sequence 5