PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g13211.1.p | ||||||||
Common Name | BRADI_4g13211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 658aa MW: 74555.2 Da PI: 6.4029 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68 | 2.4e-21 | 127 | 252 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......................................tekerrtra 56 Yn+YA+ +GFs++ ++s+ s ++ + k++fvC++ k+++ +++ +k+rr+++ Bradi4g13211.1.p 127 HYNAYARVMGFSIKSNTSRWSAYTNLVEKQQFVCNRFRKPKPVDDAagkssnptgnssrarrddsssdeehvdapnedpllvrkVVKKRRRES 219 6*****************************************99999************************************9999999*** PP FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++tgCkak++vk++ dg+wev+ ++ +HnHel Bradi4g13211.1.p 220 IKQTGCKAKMTVKLT-DGRWEVIFFVADHNHELI 252 ***************.****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.5E-19 | 127 | 252 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.137 | 473 | 509 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.1E-4 | 480 | 508 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0048 | 484 | 511 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MLDLNEIPCD LDDGFGGCVE PAYCTPAIPV AVHEEVGESP ATIRIADNEP LIRAPIAGDS 60 TAVADDTNVV ADDTNVVAED SVGVAEETTG VACDAPDNIE QEIECSSQPQ EPFLGMRFDT 120 LAGAKAHYNA YARVMGFSIK SNTSRWSAYT NLVEKQQFVC NRFRKPKPVD DAAGKSSNPT 180 GNSSRARRDD SSSDEEHVDA PNEDPLLVRK VVKKRRRESI KQTGCKAKMT VKLTDGRWEV 240 IFFVADHNHE LITKPSLTKY LLSHKNISPE EEAFLRILDD CNLETGQMMT LMSMFYANGF 300 IVPYTTKTIS NFRSNIRSER KGDDMAETVS YFMAKQKEDP SFYFNVKLDE DEREHADFTH 360 LYNIRRTWVP CYFQDCFFPF LQSTQRSEGF NAVLKRYVNP HNSILNFVKQ YEKIQVKILV 420 KEGGNDYRTD HLTQATWNEF MLTRRYNVRP QQNDLYRLEP NMTYCQFYGS RSYLVLARVV 480 DDEYSCECGK MKRDGLLCCH ILKVFTHLGI DEIPERYIMR RWTQNAVPRE VARLDETQPD 540 ALPLESLKQI RMANLSVKYG ELARISCCSD AANAIAEKYI RMTKTEITHL NLTRRKDAKR 600 RRETAAREAS AASASSAPAT THAATPPAPT TAPRLQQLQV VLQQLQPQPP QQQPPQQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g13211.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010233530.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0Q3EJ07 | 0.0 | A0A0Q3EJ07_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-17 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g13211.1.p |