PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g12065.1.p | ||||||||
Common Name | BRADI_4g12065 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 32582.3 Da PI: 5.5926 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.7 | 2.3e-49 | 1 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGf+FhPtd+el+ +yL++++++ ++++ +i++vdiyk++PwdLp ++ ++e+ewyfFs+rd+ky++ r+nra+ sgyWkatgkdk+++ Bradi4g12065.1.p 1 LPPGFQFHPTDDELILHYLRNRAASVPCPV-PIIADVDIYKFDPWDLPCQAVHGEQEWYFFSPRDRKYPNWIRPNRAAGSGYWKATGKDKPIH 92 79****************************.88***************76667899************************************9 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ge vg+kk Lvfy+gr p g++tdW+mheyrl Bradi4g12065.1.p 93 DCaTGEPVGIKKGLVFYTGRPPMGRRTDWIMHEYRL 128 9778999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 56.758 | 1 | 166 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.5E-60 | 1 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-26 | 2 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
LPPGFQFHPT DDELILHYLR NRAASVPCPV PIIADVDIYK FDPWDLPCQA VHGEQEWYFF 60 SPRDRKYPNW IRPNRAAGSG YWKATGKDKP IHDCATGEPV GIKKGLVFYT GRPPMGRRTD 120 WIMHEYRLAV SSDGPITSNN NNNNNNNNNN NNNNLDDWVL CRISMSSSSP ALPVVVVPSP 180 AADDHMDNSN IKDDDGLLRF FVDPGAPGLP GPAVPSMSEL LDNDELTQLL DAAAPADEHL 240 SLNQLLSIGD CHDARAEYSS SPPPAPINAG KRKAACPEED RRAIFRRGKA SYRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-62 | 1 | 163 | 15 | 165 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}. | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g12065.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310305.1 | 0.0 | NAC domain-containing protein 67-like | ||||
Swissprot | D2SMN4 | 1e-70 | NAMB1_HORVS; NAC transcription factor NAM-B1 | ||||
Swissprot | Q8GY42 | 1e-71 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A0Q3EIK3 | 0.0 | A0A0Q3EIK3_BRADI; Uncharacterized protein (Fragment) | ||||
STRING | BRADI1G17480.1 | 1e-107 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 6e-72 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g12065.1.p |
Publications ? help Back to Top | |||
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