PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g09490.3.p
Common NameLOC100842686
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 173aa    MW: 19119.5 Da    PI: 5.2546
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g09490.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-16243548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +++E+ l++++++++G++ W++Ia +++ gRt++++k++w++++
  Bradi4g09490.3.p  2 SPQEEHLIIELHARWGNR-WSRIAGRLP-GRTDNEIKNYWRTHM 43
                      89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.3E-9145IPR001005SANT/Myb domain
CDDcd001672.51E-11143No hitNo description
PROSITE profilePS5129423.761147IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-20244IPR009057Homeodomain-like
PfamPF002498.4E-15242IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-12247IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSPQEEHLII ELHARWGNRW SRIAGRLPGR TDNEIKNYWR THMRKKAQER TTDMSPSSSC  60
SSFTYQSGLI QIAPITGKEE GSASNGSTSI SSVLKSNQSV MDGYSMDQIW REIEAPAMLP  120
IDDKACGNLA CPLLPSPVGD CYYSEVVWKM DDYDTKILAP EIGYVTGGGS CY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g09490.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757969.11e-126myb-related protein MYBAS1 isoform X1
RefseqXP_014757970.11e-127myb-related protein MYBAS1 isoform X3
SwissprotQ53NK63e-66MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLI1IJ641e-125I1IJ64_BRADI; Uncharacterized protein
STRINGBRADI4G09490.11e-126(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.11e-35myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]