PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g09490.2.p | ||||||||
Common Name | BRADI_4g09490, LOC100842686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 22877.8 Da PI: 8.1174 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 7.1e-17 | 33 | 77 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr++++E+ l++++++++G++ W++Ia +++ gRt++++k++w++++ Bradi4g09490.2.p 33 GRMSPQEEHLIIELHARWGNR-WSRIAGRLP-GRTDNEIKNYWRTHM 77 89*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.426 | 12 | 26 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 12 | 39 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.17E-21 | 12 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.052 | 27 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-14 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 33 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.13E-11 | 34 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 40 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDRAGGPATG LNRTGKSCRL RWVNYLHPGL KHGRMSPQEE HLIIELHARW GNRWSRIAGR 60 LPGRTDNEIK NYWRTHMRKK AQERTTDMSP SSSCSSFTYQ SGLIQIAPIT GKEEGSASNG 120 STSISSVLKS NQSVMDGYSM DQIWREIEAP AMLPIDDKAC GNLACPLLPS PVGDCYYSEV 180 VWKMDDYDTK ILAPEIGYVT GGGSCY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-17 | 13 | 81 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-17 | 13 | 81 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-17 | 13 | 81 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g09490.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367218 | 1e-144 | AK367218.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2053B03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577218.1 | 1e-154 | myb-related protein MYBAS1 isoform X2 | ||||
Swissprot | Q53NK6 | 2e-87 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | I1IJ63 | 1e-152 | I1IJ63_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G09490.1 | 1e-146 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-54 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g09490.2.p |
Entrez Gene | 100842686 |
Publications ? help Back to Top | |||
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