PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g09410.1.p | ||||||||
Common Name | BRADI_4g09410, LOC104584886 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 151aa MW: 16670.9 Da PI: 10.5273 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C Cg++F++ L H +H Bradi4g09410.1.p 47 YECRSCGRRFKTFQALGGHRTSH 69 99**********99999888877 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F + L H+r+H Bradi4g09410.1.p 87 HRCGTCGLVFGTGQALGGHMRRH 109 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.946 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.4 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.63E-7 | 47 | 109 | No hit | No description |
Pfam | PF13912 | 8.4E-9 | 47 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.3E-9 | 87 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDDVVRRRLL QLVLMLSSSP APASKVIAKK KKIKSRKHLH DEEDGGYECR SCGRRFKTFQ 60 ALGGHRTSHN RRPPTAGSRK LAAAAEHRCG TCGLVFGTGQ ALGGHMRRHF TRPPAAAAWS 120 TEAMASAGRR EEEDDDDDHD AWVPRLIQFI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g09410.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238980.1 | 1e-108 | zinc finger protein ZAT11 | ||||
TrEMBL | I1IJ53 | 1e-106 | I1IJ53_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G09410.1 | 1e-107 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g09410.1.p |
Entrez Gene | 104584886 |