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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g09238.1.p | ||||||||
Common Name | BRADI_4g09238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 631aa MW: 71685.7 Da PI: 7.1227 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 330.4 | 3.3e-101 | 248 | 619 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 + lL++cAeav+s+d + a++lL+r++ ++sp+g++ qRla+yf++AL+ar+a+++ + y+ l +ts ++e ++a++l+s ++ + k++ Bradi4g09238.1.p 248 EMLLIRCAEAVASNDRSSASELLERIKWHSSPRGNARQRLAHYFAQALEARVAGTGRQFYQPLIGMRTS---TVEYIKAYHLYSATFCFGKVA 337 579**********************************************************99877777...89******************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +l N++I++a++g +++Hi+ ++i+ GlQWp L+q La+R++gpp++R+T +++p++g +e++ee g+rL+++A ++gv+++f++ ++ + Bradi4g09238.1.p 338 FLFSNKTIYNAIAGRRKLHIVHYGINTGLQWPDLIQWLADREGGPPEVRMTSIDRPQPGfrPSEQIEEAGHRLTNYAIKFGVSIKFHA-ITAE 429 ****************************************************************************************.6889 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 e+++ e+L+++p+E+l+Vn+ +q +l+des++ + +rd+vL+++++++P v+++ ++ +++s+ F +rf +al+ ++alfd +e+++p Bradi4g09238.1.p 430 PEAVRAEDLHIDPDEVLVVNSLFQFRNLMDESLAFDRvsPRDKVLNTIRKMKPSVFIHGISNGSYGSAVFRTRFRHALHNFTALFDVMETTIP 522 9*******************************9988777****************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 r++++r +Er +++r+++n++acega+r+er +++++W++r ++aG++++pl+ +++ k +r+ + + ++++e+++ l++gWk+r+L++ Bradi4g09238.1.p 523 RNNDKRLQLERDFFARSAMNMIACEGADRVERPQNYREWQMRNHRAGLRQLPLDPDVVLMLKEEVRNKYHKHFMINEHHQLLLQGWKGRALYA 615 *********************************************************************999********************* PP GRAS 370 vSaW 373 S W Bradi4g09238.1.p 616 HSTW 619 **** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.358 | 221 | 600 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-98 | 248 | 619 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MAVTQEDQLL GVVESAPLPR SVSLDLPQTT HGDSKQPQDD LSLAYISRML MEDDIVDKFV 60 CQYPDQPKLL QAEQHFARIL STAATTSYEA QESSAPDALA SALLPSEVHD PAFFSSGTVE 120 LSSTLFPVEC STSMNKMSHM AFFKGIEEGK MFLPRDNLMV DSRGCMNKFD MGGVTEPAMG 180 RSSKRIAVLV QTDPEEDDML KKMLDRLILN GYDRYPSEMQ DLIITLDKEN IRRHRRRGAR 240 QMVVTDLEML LIRCAEAVAS NDRSSASELL ERIKWHSSPR GNARQRLAHY FAQALEARVA 300 GTGRQFYQPL IGMRTSTVEY IKAYHLYSAT FCFGKVAFLF SNKTIYNAIA GRRKLHIVHY 360 GINTGLQWPD LIQWLADREG GPPEVRMTSI DRPQPGFRPS EQIEEAGHRL TNYAIKFGVS 420 IKFHAITAEP EAVRAEDLHI DPDEVLVVNS LFQFRNLMDE SLAFDRVSPR DKVLNTIRKM 480 KPSVFIHGIS NGSYGSAVFR TRFRHALHNF TALFDVMETT IPRNNDKRLQ LERDFFARSA 540 MNMIACEGAD RVERPQNYRE WQMRNHRAGL RQLPLDPDVV LMLKEEVRNK YHKHFMINEH 600 HQLLLQGWKG RALYAHSTWA ADDAGGSDLT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-40 | 251 | 619 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g09238.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575626.3 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | A0A0Q3H129 | 0.0 | A0A0Q3H129_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G09235.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-122 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g09238.1.p |