PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g08220.1.p | ||||||||
Common Name | BRADI_4g08220, LOC100823903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 337aa MW: 35131.7 Da PI: 9.8704 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 3e-18 | 24 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v ++G ++W++I++ ++ gR++k+c++rw + Bradi4g08220.1.p 24 KGPWSPEEDEALQRLVGRHGARNWSLISKSIP-GRSGKSCRLRWCNQ 69 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.6e-17 | 78 | 120 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ede +++a++++G++ W+tIar ++ gRt++ +k++w++ Bradi4g08220.1.p 78 PFTADEDEAILRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 120 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.186 | 19 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.96E-31 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-16 | 23 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-18 | 24 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 25 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.86E-15 | 26 | 68 | No hit | No description |
SMART | SM00717 | 7.7E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.31 | 76 | 125 | IPR017930 | Myb domain |
CDD | cd00167 | 4.21E-12 | 78 | 121 | No hit | No description |
Pfam | PF00249 | 2.2E-14 | 78 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-23 | 78 | 124 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MAAAAAACRA GGGGVGSKDA DRIKGPWSPE EDEALQRLVG RHGARNWSLI SKSIPGRSGK 60 SCRLRWCNQL SPQVEHRPFT ADEDEAILRA HARFGNKWAT IARLLNGRTD NAIKNHWNST 120 LKRKYSSMPA GGAGGAGGAD DGGDDVAARP LKRTSSDGHP GLCFSPGSPS GSDLSDSSHH 180 SLPSVMPSSS THVYRPVARA GGVVVLPTAA ATPPQPQPAS PPPAPAPATS LSLSLSLPGL 240 DPSQSHSQAP AAVLPAAPGA QAQAQVQMAF QLQPPPPAMN LAAPRPPAPF TGEFLSMMQE 300 MIRIEVRNYM SGFDTRSPAD AVHAANRMMM SMTKIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-39 | 21 | 124 | 4 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00274 | DAP | Transfer from AT2G23290 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g08220.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085714 | 1e-118 | BT085714.2 Zea mays full-length cDNA clone ZM_BFc0050J01 mRNA, complete cds. | |||
GenBank | EU970300 | 1e-118 | EU970300.1 Zea mays clone 343188 sucrose responsive element binding protein mRNA, complete cds. | |||
GenBank | HQ858706 | 1e-118 | HQ858706.1 Zea mays clone UT1162 MYB-RELATED transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575562.1 | 0.0 | transcription factor MYB44 | ||||
Swissprot | O23160 | 7e-84 | MYB73_ARATH; Transcription factor MYB73 | ||||
Swissprot | Q9FDW1 | 4e-84 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | I1IIQ5 | 0.0 | I1IIQ5_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G08220.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 1e-68 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g08220.1.p |
Entrez Gene | 100823903 |