PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g07952.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 648aa    MW: 74214.7 Da    PI: 7.9043
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g07952.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1371.1e-1192179190
              FAR1   1 kfYneYAkevGFsvrksk..skks.....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       k++n Y+ evGF +r  k  ++k+     k+ +  t+++ vC ++g ++++         ++ + r++Ck ++++ +++d+ w+++++ l+Hn
  Bradi4g07952.2.p  92 KYFNLYSWEVGFGIRYGKgcNYKRksgpkKDVEYGTMQQIVCGCQGLPKKK---------NTCSIRCDCKVMIRLLRSEDHGWYIKECILQHN 175
                       69*************865323333447644445568889999999998875.........4569***************************** PP

              FAR1  87 Hela 90 
                       H+++
  Bradi4g07952.2.p 176 HPVS 179
                       *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-892179IPR004330FAR1 DNA binding domain
PfamPF105517.9E-26302394IPR018289MULE transposase domain
PROSITE profilePS509669.52585621IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MDPPDTCGSS CSAAADCGNV NGGRSYGSNY GPEIPEGSIE IWSEAGPSVD ESVPGRAGPL  60
EIALRGFAHR RGESILFVET GLCFDSLPEA YKYFNLYSWE VGFGIRYGKG CNYKRKSGPK  120
KDVEYGTMQQ IVCGCQGLPK KKNTCSIRCD CKVMIRLLRS EDHGWYIKEC ILQHNHPVSR  180
NDGEKKCWPS HKHIDRYTRE LVRNLRENNV PLTKVYIILG SYFGAVEDIP FNKRSLENLC  240
KQLSKEEANS DVRKTMELFS KMRDEDPSFV YTADLDCDGR IRTLIWVNGK SKMDYRYFGD  300
AITFDTTYKT NLYGIPFGLF VGVNNHFQSI IFSGVLMRQE TIESFEWIFR EFTSLMGGKH  360
PVTILTDQCR ATEVTIERVF NNTTHGWCKW HVLKMAKEKL GSVYSKYNTF KAEFHKLINY  420
SITVVEFEDA WEELIGKYHL RDHHFLTPIY ESHHRWAKPY FAGIFCAKMT STQHSESANH  480
MLKGYVPPGA PMHLFVKQYN KLIADCVSKE DSENQRTRMG GVVLRTGWPI EKHAATVYTS  540
KMLEMFSDHI FDSAAYNVTE IVEKKTYLLS HSDASRRERW CKVHYEVTIS DDGGKYKCEC  600
GLAEHMGMLC CHAIRVMLQL GVQKIPEGHI LKRWTRNASD VLPDHLAH
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g07952.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197126.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CL580.0A0A2K2CL58_BRADI; Uncharacterized protein (Fragment)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-81FAR1-related sequence 5