PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g07607.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 788aa    MW: 90391.2 Da    PI: 8.8528
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g07607.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.39.3e-1278165190
              FAR1   1 kfYneYAkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       +++n Y+ e+GF +r  +s++        k+    t+++ vC +eg++++++++         + r+gC   +++ +++d+ w+++++el+Hn
  Bradi4g07607.1.p  78 EYFNLYSWEIGFGIRYGRSHNYkckygpkKDVIYKTMQNIVCGCEGFPTKKNTS---------SVRCGCGTLIRLLRSDDHGWYIKDCELQHN 161
                       589************8776665567876334444567899*******9997655.........9***************************** PP

              FAR1  87 Hela 90 
                       H+l+
  Bradi4g07607.1.p 162 HPLS 165
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-878165IPR004330FAR1 DNA binding domain
PfamPF105511.7E-28267359IPR018289MULE transposase domain
PROSITE profilePS509669.112550586IPR007527Zinc finger, SWIM-type
SMARTSM005750.0078561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MEGSYEEWSE IGASVDDSGV SACSRRKKFE IGPSARPTVP GRASALENSL RGFAHRTTDN  60
ILCPEIGLCF DYLPEAYEYF NLYSWEIGFG IRYGRSHNYK CKYGPKKDVI YKTMQNIVCG  120
CEGFPTKKNT SSVRCGCGTL IRLLRSDDHG WYIKDCELQH NHPLSRNIGE KLCWPSHKHI  180
DRYTRDLVRN LRHNNVPLTK VYNIVGTYFG STDDVPFNKR SLENLCKQLS KEEANDDVRK  240
TMKLFTKMRD EDPSFVKLDY RYFGDAITFD TTYKTNLYGM PFGLFVGVNN HFQSIIFSGV  300
LMRQETIQSF EWIFREFTSL MGGKAPRTIL TDQCRVMEVA IERVFPNTTH RWCKWHVLKI  360
AKEKLGSVYN KYNNFKSEFH KLINHRITIV EFESTWEELI EKYDLKEHHF LTPIYECRHR  420
WAKPYFSGVF CAKMTSTQRS ESANHMLKGY VPPGAPMHLF VKQYNKLIAD RISKEDAENQ  480
RTRMGGVVLK TGWPIEKHAT TIYTSAMLEM FSDHIFDSAA YNVIEVAPNK KYLTVHSDAS  540
RRQKWSKVHY EITISDDGGH YQCECGLAEH IGMLCCHAIR VMLQFGIDKV PDSHILKRWT  600
KEANDVLPHH LAHLQKDRGS LHSQSYRHAS LHVAAMELAT IGDKNIECYH QVLKYISDGK  660
DKFNEMYQHT DGRSLQEIIA QTELPGPAPA DSGQLHVGVI APVRNRPEGR PTNTREKPCY  720
ELKRKRTKFC TISKLSGHNR GACKSNIDKV PGKRTESKCG KCGVAGHRRN VCGTSVDVQM  780
VEFQLGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g07607.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317341.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CL250.0A0A2K2CL25_BRADI; Uncharacterized protein
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-74FAR1-related sequence 5