PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g07470.1.p
Common NameBRADI_4g07470, LOC100841363
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 817aa    MW: 90567.7 Da    PI: 6.8391
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g07470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-22136237199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++a+e+       +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+ ++L ++D ++F   +
  Bradi4g07470.1.p 136 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--NPPTQELMTRDLHGVEWRFRHIFRGQPKRHLLQSGWSVFVSNKRLVARDAFIFL--R 224
                       99*****************************743..334459************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++el+v+v+r+
  Bradi4g07470.1.p 225 GENGELRVGVRRA 237
                       49999*****996 PP
2Auxin_resp112.92.9e-37262344183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++t+s+F+v+Y+Pr+s++eFvv+++ + +++k++ s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp+ W +SkWrsLk
  Bradi4g07470.1.p 262 AWHAVNTGSMFTVYYKPRTSPAEFVVPCDLYYESMKRNHSIGMRFKMRFEGEEAAEQRFTGTIVGIGDSDPSGWADSKWRSLK 344
                       89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-38129265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-40130251IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-18134236No hitNo description
PROSITE profilePS5086310.941136238IPR003340B3 DNA binding domain
PfamPF023622.7E-20136237IPR003340B3 DNA binding domain
SMARTSM010191.4E-19136238IPR003340B3 DNA binding domain
PfamPF065072.2E-34262344IPR010525Auxin response factor
PROSITE profilePS5174522.19704788IPR000270PB1 domain
SuperFamilySSF542778.14E-10705780No hitNo description
PfamPF023091.8E-6745791IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MAAAATAAAG RGAGGQGGAV DELYAELWKA CAGPLVSVPA VGERVFYFPQ GHIEQVEAST  60
NQVAEQQGAP LYNLPWKIPC KVMNVELKAE QDTDEVYAQL TLLPEKQNEH ASTEGEKEEV  120
PAAVPAVHER PRVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSQN PPTQELMTRD  180
LHGVEWRFRH IFRGQPKRHL LQSGWSVFVS NKRLVARDAF IFLRGENGEL RVGVRRAMRQ  240
QANIPSSVIS SHSMHLGVLA TAWHAVNTGS MFTVYYKPRT SPAEFVVPCD LYYESMKRNH  300
SIGMRFKMRF EGEEAAEQRF TGTIVGIGDS DPSGWADSKW RSLKVRWDEA SSVPRPDRVS  360
PWQIEPAVSP LSVNPLQAPR NKRSRPNAIA SSPELSPVNR EVSSKVTANS QHNGLPRALQ  420
RQESETSTSR FGDNNVKTPG KLTMWPSRTD QEKSNITVQR SSEGWMQMQR PEGYTNIVSR  480
FQPLKDAQNP PCSFPSQISG NCSNTWNIVN VHYPDQQVNR NTFPGTWSCM PPNSGFGVNQ  540
HNYLMTPDRA PSQRAENAKF SWNGDFTSVQ ARGIDERSLG WFEHAEPNPH IDDASSSVIK  600
SHPLGHALGK TKGSPCMLFG FPLDGPAKSE PMISPPSVAY DGMPETPCSE KQPQPEVIEL  660
DRSPGTSKLV SPLDENQSDS AMAKHQTCPE ATRNIQSKLQ CSTRSCKKVH KQGIALGRSV  720
DLTRFTCYDE LIAELDRMFD FGGELKGSCE NWMVVYTDSD NDMMLVGDDP WNEFCDVVHK  780
IFIYTREEVS KMNPGALVSR SEDSLSASLD RGVVGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16673662354Auxin response factor 1
4ldw_A1e-16673662354Auxin response factor 1
4ldw_B1e-16673662354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g07470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0138020.0DQ013802.1 Phyllostachys praecox ARF1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237262.10.0auxin response factor 24
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLI1IIF90.0I1IIF9_BRADI; Auxin response factor
STRINGBRADI4G07470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]