PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g06867.1.p
Common NameBRADI_4g06867, LOC100825639
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 24727.1 Da    PI: 9.5214
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g06867.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.4e-261059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rienk  rqvtfskRr g+lKKA EL vLCda++a i+fs +g+ly+ys+
  Bradi4g06867.1.p 10 RIENKVSRQVTFSKRRSGLLKKARELAVLCDADIAAIVFSANGNLYTYST 59
                      8***********************************************96 PP
2K-box58.23.7e-20941732099
             K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       ++  L++++e L+++ R+l+Ge+L+sL+ +  qqLeqq+ ++l++iR +++ ll ++i+el++ke+ l e+nk L++k +
  Bradi4g06867.1.p  94 DHILLRSQVEALRKSERNLMGEQLGSLTQRGVQQLEQQIGDALRSIRLRRDFLLANSIRELRNKERLLMEQNKILQRKKA 173
                       55679***********************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.151161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-35160IPR002100Transcription factor, MADS-box
CDDcd002654.36E-37274No hitNo description
SuperFamilySSF554554.84E-30275IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.02188179IPR002487Transcription factor, K-box
PfamPF014863.9E-1794171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKVHLRR IENKVSRQVT FSKRRSGLLK KARELAVLCD ADIAAIVFSA NGNLYTYSTQ  60
SSMDKILERY QRCSLSEGGV IEDYSELEGS TNSDHILLRS QVEALRKSER NLMGEQLGSL  120
TQRGVQQLEQ QIGDALRSIR LRRDFLLANS IRELRNKERL LMEQNKILQR KKAELLQASM  180
HKNCTSAFCN AAAASLPNLN ISIEDGNSDN EPAGSVMASV D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-191109192MEF2C
5f28_B4e-191109192MEF2C
5f28_C4e-191109192MEF2C
5f28_D4e-191109192MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g06867.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693260.0KF469326.1 Brachypodium distachyon MADS-box transcription factor 31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288315.11e-160MADS-box transcription factor 20-like
SwissprotQ2QQA36e-69MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLI1II851e-158I1II85_BRADI; MADS-box transcription factor 31
STRINGBRADI4G06867.11e-159(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-54MIKC_MADS family protein
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]