PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g06690.1.p
Common NameBRADI_4g06690, LOC100827705
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 502aa    MW: 53440.6 Da    PI: 8.1559
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g06690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31230286259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Bradi4g06690.1.p 230 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPSCPVKKKVEHAE-DGQISEIIYKGKHNHQ 286
                       8**************************************99.***************8 PP
2WRKY1084.7e-34386444159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Bradi4g06690.1.p 386 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 444
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28226288IPR003657WRKY domain
SuperFamilySSF1182905.1E-25228288IPR003657WRKY domain
SMARTSM007741.1E-33229287IPR003657WRKY domain
PROSITE profilePS5081123.192230288IPR003657WRKY domain
PfamPF031062.8E-24230286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-37372446IPR003657WRKY domain
SuperFamilySSF1182902.88E-29378446IPR003657WRKY domain
PROSITE profilePS5081137.413381446IPR003657WRKY domain
SMARTSM007747.0E-40386445IPR003657WRKY domain
PfamPF031064.1E-26387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSSRPPPPPR PHLSLPPRST AESLFTGVGD ASPGPLTLAS ALFSSDSDAD GGGGGGGGSA  60
SSGSGPTSFT QLLIGNLSQP PQQQQQQQQQ QQERGRGGVA RAGPAISVAP PAGAAVFTVP  120
PGLSPSGLFD SPGLIFSPAM GGFGMSHQQA LAQVTAQASH SPLRMFDHIE QPSFSAAASS  180
SEAVQHMSSA ANMAGMSEMA TISNNDNAAF HSAEASQRYQ VPAPVDKPAD DGYNWRKYGQ  240
KVVKGSDCPR SYYKCTHPSC PVKKKVEHAE DGQISEIIYK GKHNHQRPPN KRAKDGNSSA  300
AEHNEQSNDT ASGLSGVRRD QEAVYAMSEQ LSGLSDGDDK DDGESRPNEV DNGENDCKRR  360
NIQVSSQKTL TESKIIVQTT SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY KCTFAGCNVR  420
KHIERASSDP KAVITTYEGK HNHEPPVGRG SNQNAGNSAP SNRSQQKGPS SMSSNQTSLT  480
RTDFSNNNQR PIGVLQFKRE E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-39230446877Probable WRKY transcription factor 4
2lex_A8e-39230446877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g06690.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2168400.0JX216840.1 Hordeum vulgare WRKY61 protein (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576063.10.0probable WRKY transcription factor 3
SwissprotQ9XI901e-124WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLI1II620.0I1II62_BRADI; Uncharacterized protein
STRINGBRADI4G06690.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-112WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]