PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g06317.1.p
Common NameBRADI_4g06317, LOC100824318
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 389aa    MW: 42070 Da    PI: 6.5687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g06317.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-153279148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
  Bradi4g06317.1.p 32 KGLWSPEEDERLVAYMLRSGQGSWSDVARNAGLLRCGKSCRLRWINYL 79
                      678*****************************99************97 PP
2Myb_DNA-binding51.62.1e-1685128146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++++E++l+v++++ lG++ W+ Ia++++ gRt++++k++w++
  Bradi4g06317.1.p  85 RGAFSPQEEDLIVNLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 128
                       89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5452779IPR017930Myb domain
SuperFamilySSF466894.3E-2830126IPR009057Homeodomain-like
SMARTSM007176.1E-113181IPR001005SANT/Myb domain
PfamPF002493.1E-133279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-213386IPR009057Homeodomain-like
CDDcd001678.48E-93579No hitNo description
PROSITE profilePS5129424.97180134IPR017930Myb domain
SMARTSM007171.3E-1584132IPR001005SANT/Myb domain
PfamPF002496.9E-1585128IPR001005SANT/Myb domain
CDDcd001673.29E-1187127No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2587134IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MRKPECPTTK AASGPGNSCS NVVAASAAKL RKGLWSPEED ERLVAYMLRS GQGSWSDVAR  60
NAGLLRCGKS CRLRWINYLR PDLKRGAFSP QEEDLIVNLH AILGNRWSQI AARLPGRTDN  120
EIKNFWNSTI KKRLKVSSAA SSPATTTECA SPPEPKLDVG CLDLASLEDG GHHAMIKSTW  180
RMMDSSSSTS SSSSMQTRPS SAMAAASRSY SGGLLLPLPD QVCGGGETQA PPLFFHDHHP  240
LSFKHASALH GGSYYHHGVA MEDGGAGCFM GEEVVAGEES ALFNVPPPLQ LEPAMAAAQD  300
QTLMASRNKS TTPEATTLSS NNGSNITDNN DNSKNNNVSS SVVYWPEQLH GHQQQQQQHM  360
SRNVMGEWDL EELMKDVSSL PFLDFQVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-272913424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g06317.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6720681e-143AY672068.1 Hordeum vulgare subsp. vulgare myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575963.10.0myb-related protein Zm38
SwissprotQ9C6U17e-68MYB83_ARATH; Transcription factor MYB83
TrEMBLI1II190.0I1II19_BRADI; Uncharacterized protein
STRINGBRADI4G06317.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-65myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]