PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g06146.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 652aa    MW: 75170.5 Da    PI: 8.8239
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g06146.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.58.8e-1321105490
              FAR1   4 neYAkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       n Y+ evGF +r s+sk+        k+    t ++ vC +eg+++++++         +  r+gCka++++ ++kd+ w++++++leHnH+l
  Bradi4g06146.1.p  21 NLYSWEVGFGIRYSRSKSYkcksgpkKDVVYQTLKHIVCGCEGYPRKKNT---------SYVRCGCKAMIRLLRTKDHGWYIKECKLEHNHNL 104
                       78*********998877655566652222233457788999999887654.........59*******************************9 PP

              FAR1  90 a 90 
                       +
  Bradi4g06146.1.p 105 S 105
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-1019105IPR004330FAR1 DNA binding domain
PfamPF105513.7E-26228319IPR018289MULE transposase domain
PROSITE profilePS509668.691511547IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
NYVPKIGLCF DSLAEAYEYI NLYSWEVGFG IRYSRSKSYK CKSGPKKDVV YQTLKHIVCG  60
CEGYPRKKNT SYVRCGCKAM IRLLRTKDHG WYIKECKLEH NHNLSRNNGE KMCWPSHKHI  120
DRYTRELVRN LRENNLPLTK VYSILGTYFG STEDIPFNKR SLENLCKQIS KEEANDDVRK  180
TMDLFTKMRD EDPSIVYTAD LDSDGRIRTL IWVNGKSKMD YKCFGDAITF DTTYKTNLYG  240
MPFGLFVGVN NHFQSIIFSG VLMRQETIES FESIFREFTS LMGGKPPVTI LTDQCRAMEV  300
AIERVLKNTT HRWCKWHVPK MAKERLGSVY TKYSNFEPEF HKLINYSITV EEFEAAWEGL  360
LQKYDLKEHH FLTPIYEARH HWAKPYFSGI FCAKMISTQR SESANHMLKG YVPPGAPMHL  420
FVKQYNKLIA DRILKEDSEN QRTRMGGVVL KTGWPIEKHA ATVYTSAMLQ LFSDHIFGSA  480
ACNVIKAEAN KKYLTIHSDA ARREKWSKVN YEVTISDGGC MYKCECGLAE HMGMLCCHSI  540
RVMLRQGVDK IPEGHILKRW TKDATDVLPD HLVHLQKDRG SARSQSYRHA TLHVAALELA  600
AIGDKNVDCY HDVVKYMKDG TKKFGSLLER LLLEEDIVHF VMYPNVPSCT T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g06146.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197126.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CKS60.0A0A2K2CKS6_BRADI; Uncharacterized protein (Fragment)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-85FAR1-related sequence 5