PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g04627.1.p | ||||||||
Common Name | BRADI_4g04627, LOC100825980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 30863.1 Da PI: 6.0351 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.5e-17 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ lv++++++G g+W+ ar g++Rt+k+c++rw++yl Bradi4g04627.1.p 21 RGPWTVDEDLTLVNYIAEHGEGRWNCLARGAGLKRTGKSCRLRWLNYL 68 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Bradi4g04627.1.p 74 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.4 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-30 | 19 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-22 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.78E-10 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 23.86 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-16 | 74 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-11 | 76 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 76 | 122 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MASSPSSQRI SSTVAEAEVR RGPWTVDEDL TLVNYIAEHG EGRWNCLARG AGLKRTGKSC 60 RLRWLNYLRP DVKRGNFTAD EQLLILDLHS RWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ 120 KHAKQLNCDA NSSKFKDAMR YLWMPRLADH HRLHHQASDH AAMPAGQQPM GGYMESSGGM 180 ATSSSGSFAS ESYDGGFYSG SFASESYDGG FYSNACLGET MLNDDGNCWI QEAGFCAEAA 240 TDCQFQDTEL SGWVQGFSEG LAEDFWSLDD VWKMQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 14 | 121 | 20 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g04627.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009018 | 1e-121 | BT009018.1 Triticum aestivum clone wdk3c.pk006.n12:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579302.1 | 0.0 | transcription factor JAMYB | ||||
Swissprot | Q2QZJ8 | 1e-105 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | I1IHH6 | 0.0 | I1IHH6_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G04627.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 2e-76 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g04627.1.p |
Entrez Gene | 100825980 |
Publications ? help Back to Top | |||
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