PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g04050.5.p

Common Name

BRADI_4g04050, LOC100839870

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 177aa MW: 20267.8 Da PI: 6.0156

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g04050.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	2	43	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Bradi4g04050.5.p 2 TAHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43 99**************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	2.74E-12	1	43	No hit	No description
PROSITE profile	PS51294	23.739	1	47	IPR017930	Myb domain
SMART	SM00717	4.4E-11	1	45	IPR001005	SANT/Myb domain
Pfam	PF00249	6.7E-14	2	42	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-19	2	44	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.09E-12	2	49	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MTAHEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRSMSPSSSS 60 SSLTYQSCNP ETPSITGIDE QELHGGSNCI TSILKGMPVD MDGYLMDQIW MEIEAPEAPS 120 EPSFHDGKDN LYNSASGPLL PSPMWDYYCT EPRWKTDDDI KMAPQFGYSK GMDPCY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g04050.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237138.1	1e-130	myb-related protein MYBAS2
Swissprot	Q4JL76	2e-86	MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBL	I1IHB0	1e-128	I1IHB0_BRADI; Uncharacterized protein
TrEMBL	I1IHB2	1e-129	I1IHB2_BRADI; Uncharacterized protein
STRING	BRADI4G04050.1	1e-129	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.1	2e-30	myb domain protein 59

Link Out ? help Back to Top
Phytozome	Bradi4g04050.5.p
Entrez Gene	100839870

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]