PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g04050.3.p | ||||||||
Common Name | BRADI_4g04050, LOC100839870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 177aa MW: 20267.8 Da PI: 6.0156 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.1e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Bradi4g04050.3.p 2 TAHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43 99****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.74E-12 | 1 | 43 | No hit | No description |
PROSITE profile | PS51294 | 23.739 | 1 | 47 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-12 | 2 | 49 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MTAHEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRSMSPSSSS 60 SSLTYQSCNP ETPSITGIDE QELHGGSNCI TSILKGMPVD MDGYLMDQIW MEIEAPEAPS 120 EPSFHDGKDN LYNSASGPLL PSPMWDYYCT EPRWKTDDDI KMAPQFGYSK GMDPCY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g04050.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237138.1 | 1e-130 | myb-related protein MYBAS2 | ||||
Swissprot | Q4JL76 | 2e-86 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | I1IHB0 | 1e-128 | I1IHB0_BRADI; Uncharacterized protein | ||||
TrEMBL | I1IHB2 | 1e-129 | I1IHB2_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G04050.1 | 1e-129 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 2e-30 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g04050.3.p |
Entrez Gene | 100839870 |
Publications ? help Back to Top | |||
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