PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g04050.2.p | ||||||||
Common Name | BRADI_4g04050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 201aa MW: 22420.2 Da PI: 6.1119 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 42 | 67 | 21 | 48 |
TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48 ++ W++Iar+++ gRt++++k++w++++ Bradi4g04050.2.p 42 NR-WSRIARRLP-GRTDNEIKNYWRTHM 67 55.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.11E-9 | 34 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.75E-8 | 34 | 67 | No hit | No description |
PROSITE profile | PS50090 | 7.294 | 36 | 67 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-13 | 41 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-8 | 42 | 66 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MKNVSSSSSM LGGETGLIQP TIQLTYGSTA SLNHIFGVSL SNRWSRIARR LPGRTDNEIK 60 NYWRTHMRKK AQERKRSMSP SSSSSSLTYQ SCNPETPSIT GIDEQELHGG SNCITSILKG 120 MPVDMDGYLM DQIWMEIEAP EAPSEPSFHD GKDNLYNSAS GPLLPSPMWD YYCTEPRWKT 180 DDDIKMAPQF GYSKGMDPCY * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g04050.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237138.1 | 1e-117 | myb-related protein MYBAS2 | ||||
Swissprot | Q4JL76 | 2e-74 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | I1IHB1 | 1e-147 | I1IHB1_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G04050.1 | 1e-116 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 3e-19 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g04050.2.p |
Publications ? help Back to Top | |||
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