PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g03867.1.p

Common Name

BRADI_4g03867, LOC100836508

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 698aa MW: 76512.1 Da PI: 5.114

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g03867.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	301.3	2.3e-92	368	684	1	318
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cA+av+++d + a++lL++++ +a dgd +qRla++f+e+L+arla+++ + ++l +++ s ++ l+a++l+ + + k+ Bradi4g03867.1.p 368 LRTLLIHCAQAVATDDRRSATELLKQIKLHARHDGDGTQRLAHCFAEGLQARLAGTGGLVHQSLMATRIS---AVDMLKAYQLYMAAICFKKV 457 6789*************************************************888888777777776...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 +++ N +I++a g++++HiiD++i++G+QWp++l+ +++R++gpp++RiTg++ p++g + ++eetg+rL+k+A+e++vpf++n+++++ Bradi4g03867.1.p 458 CFIFSNFTIYNASLGKKKIHIIDYGIQYGFQWPCFLRRISEREGGPPEVRITGIDLPQPGfrPAGRIEETGRRLSKYASEFKVPFKYNAIAVT 550 *******************************************************999*************************** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e+l+ e+L+++p+E+l+Vn+ +q ++l+desv +es+rd vL+ +++++P+ ++++ + + +++ F++rf e l yysalfd l+++ pr Bradi4g03867.1.p 551 NMESLRKEDLNIDPEEVLIVNCLFQFKNLMDESVVIESPRDIVLNNIRKMQPHAFIHAIVNGSFSAPFFVTRFREVLFYYSALFDVLDTTTPR 643 ***************************************************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrer 318 ++e+r+ +E+ ++gr++ nv+acega+r+er et+++W+ + Bradi4g03867.1.p 644 DNEQRMLIEQNIFGRAALNVIACEGADRVERPETYKQWQVM 684 ************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.915	342	697	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-90	368	684	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MGSSPYLPSA MDSPGSDDPS LYLYLSDLVP GSPPSSLSAY LDLPPTPHHE QPQQQQQRSD 60 YDDLGSGGGG GGGGGGGDDK SSSTPEDLVL PFISRMLMEE DIDDKFFYDF PDNPALLQAQ 120 QPFLDILSDP SSNTTSSDSN NNNNPCSPSD ASFSPAGPLP PTPAAVDSYD SQPFQYDIDP 180 AAFFSAGANS DLMSSAFLKG MEEANKFLPS QGNLVIDLEA SSGQFLKGVE EGNKFLPKED 240 QLVVGFNGRA APVSAPTAVA SVKKEEPVDA VSANSHGGSR GRKNPYRDDE LERELGRSNK 300 QSALQGEDIS ARELFDRVLM PSPEMCVEQM QSLRIAMQEA VAKNDTGSGK VGNGKGRGRR 360 GGSDVVDLRT LLIHCAQAVA TDDRRSATEL LKQIKLHARH DGDGTQRLAH CFAEGLQARL 420 AGTGGLVHQS LMATRISAVD MLKAYQLYMA AICFKKVCFI FSNFTIYNAS LGKKKIHIID 480 YGIQYGFQWP CFLRRISERE GGPPEVRITG IDLPQPGFRP AGRIEETGRR LSKYASEFKV 540 PFKYNAIAVT NMESLRKEDL NIDPEEVLIV NCLFQFKNLM DESVVIESPR DIVLNNIRKM 600 QPHAFIHAIV NGSFSAPFFV TRFREVLFYY SALFDVLDTT TPRDNEQRML IEQNIFGRAA 660 LNVIACEGAD RVERPETYKQ WQVMRKMGSS RCGKSTR*

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MGSSPYLPSA MDSPGSDDPS LYLYLSDLVP GSPPSSLSAY LDLPPTPHHE QPQQQQQRSD  60
YDDLGSGGGG GGGGGGGDDK SSSTPEDLVL PFISRMLMEE DIDDKFFYDF PDNPALLQAQ  120
QPFLDILSDP SSNTTSSDSN NNNNPCSPSD ASFSPAGPLP PTPAAVDSYD SQPFQYDIDP  180
AAFFSAGANS DLMSSAFLKG MEEANKFLPS QGNLVIDLEA SSGQFLKGVE EGNKFLPKED  240
QLVVGFNGRA APVSAPTAVA SVKKEEPVDA VSANSHGGSR GRKNPYRDDE LERELGRSNK  300
QSALQGEDIS ARELFDRVLM PSPEMCVEQM QSLRIAMQEA VAKNDTGSGK VGNGKGRGRR  360
GGSDVVDLRT LLIHCAQAVA TDDRRSATEL LKQIKLHARH DGDGTQRLAH CFAEGLQARL  420
AGTGGLVHQS LMATRISAVD MLKAYQLYMA AICFKKVCFI FSNFTIYNAS LGKKKIHIID  480
YGIQYGFQWP CFLRRISERE GGPPEVRITG IDLPQPGFRP AGRIEETGRR LSKYASEFKV  540
PFKYNAIAVT NMESLRKEDL NIDPEEVLIV NCLFQFKNLM DESVVIESPR DIVLNNIRKM  600
QPHAFIHAIV NGSFSAPFFV TRFREVLFYY SALFDVLDTT TPRDNEQRML IEQNIFGRAA  660
LNVIACEGAD RVERPETYKQ WQVMRKMGSS RCGKSTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-38	372	693	8	322	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g03867.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003579265.1	0.0	scarecrow-like protein 34
TrEMBL	A0A0Q3EEW9	0.0	A0A0Q3EEW9_BRADI; Uncharacterized protein
STRING	BRADI4G03867.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297
Representative plant	OGRP266	15	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-134	GRAS family protein

Link Out ? help Back to Top
Phytozome	Bradi4g03867.1.p
Entrez Gene	100836508