PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g03371.2.p | ||||||||
Common Name | BRADI_4g03371, LOC100826710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 421aa MW: 45368 Da PI: 4.4164 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 66 | 115 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Bradi4g03371.2.p 66 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 115 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.32E-29 | 65 | 122 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-27 | 66 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 66 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 66 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-35 | 66 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-19 | 66 | 123 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.3E-8 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-8 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MLPSSMARKR KASDADIDIA AVISNNNNRS PPLLPLPLPP PPSSTVDAWT TSSARQQQQQ 60 QRGRKRFVGV RQRPSGRWVA EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT 120 NFWPRPSPPP IAAVQQLQVQ QQQQPAPAMA PALPSKVSNL LLLRLKARNN QQQQQLLLDA 180 STAPPLHHQQ QKQEAYGHGG RDEEYGGFHV DDFLSDECNN DSPEMEEEGE DEEEEEEELD 240 FQFMDAPSLS STAAAADSDL CSPFEMLGGT VPVEAADHDG HGHGDGGCDG EPVSAVQEAM 300 RRMDYERKIS ASLYALSGVP ECLRMRLGTG TGVAAAREQL SGLREACRKK QQLAVQEPAA 360 PAAAAEDDGK ASGQEEYSGS SSSNSAPEAA SSSSSTEENG GDGDVLLWSS LDLAPICYMT 420 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g03371.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 2e-85 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579238.2 | 0.0 | uncharacterized protein LOC100826710 | ||||
Refseq | XP_024311046.1 | 0.0 | uncharacterized protein LOC100826710 | ||||
TrEMBL | A0A0Q3IIS6 | 0.0 | A0A0Q3IIS6_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G03370.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-16 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g03371.2.p |
Entrez Gene | 100826710 |