PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi4g03340.1.p | ||||||||
Common Name | BRADI_4g03340, LOC100826089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 21491.2 Da PI: 9.9119 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.6e-05 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H r+H Bradi4g03340.1.p 130 HVCNVCGKAFATGQALGGHKRRH 152 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-4 | 68 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.02E-10 | 69 | 93 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 71 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.764 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.39 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.02E-10 | 125 | 152 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 128 | 152 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.8E-11 | 129 | 154 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.388 | 130 | 152 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.061 | 130 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 132 | 152 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MAVEPVLEAA APVLPSPSPA TSASASAPAS KLEQRGSKRK RSRQMAPSEE EQLALWLLML 60 ARGDREQERL HGCSVCGKAF ASYQALGGHK ASHRKPPSLP APAAGADEQQ PQATAASSGS 120 ASGGSGGRAH VCNVCGKAFA TGQALGGHKR RHYDGTIGSA AAKGTAKAAA NRPGFDLNLP 180 ALPEVVVEAD RQDEVSSSLE KKPRLIITA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi4g03340.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014757984.1 | 1e-148 | zinc finger protein 1 | ||||
TrEMBL | I1IH26 | 1e-147 | I1IH26_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G03340.1 | 1e-148 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04340.1 | 5e-31 | zinc finger of Arabidopsis thaliana 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi4g03340.1.p |
Entrez Gene | 100826089 |