PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g03303.5.p

Common Name

BRADI_4g03303, LOC100825161

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1116aa MW: 125617 Da PI: 6.8103

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g03303.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39	1.4e-12	8	59	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le ++ + +yp+ +++ e A+++gL +qV++WF+ rR ke++ Bradi4g03303.5.p 8 KKSPLQIQMLEGFYSEVQYPKPDDMIEYASSVGLAYSQVRIWFKERRRKERR 59 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.459	1	60	IPR001356	Homeobox domain
SMART	SM00389	4.6E-13	2	64	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-12	6	62	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.0E-13	7	64	IPR009057	Homeodomain-like
CDD	cd00086	4.25E-7	7	50	No hit	No description
Pfam	PF00046	6.6E-10	8	59	IPR001356	Homeobox domain
SMART	SM00571	0.0068	339	398	IPR018501	DDT domain
PROSITE profile	PS50827	9.902	339	398	IPR018501	DDT domain
Pfam	PF02791	6.1E-7	341	393	IPR018501	DDT domain
Pfam	PF15612	2.0E-5	618	649	IPR028942	WHIM1 domain
Pfam	PF15613	1.5E-10	741	812	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1116 aa Download sequence Send to blast
MMTNAGTKKS PLQIQMLEGF YSEVQYPKPD DMIEYASSVG LAYSQVRIWF KERRRKERRQ 60 MEAAGALMET QVSARSNGPR SMSLVGEKHA LRPQVLYPKD YILAKVFRKD GPSLGSEFDP 120 LPKSAHGHVR VADTTEYHSD QDQRVVKKRK IVECTDQGFT LPCQSNGPVR KHGMGKGLMT 180 VWHAMYSKNA EVQDVSNFID ETGCLRSLRP FDDSDGKLIQ KFFLPRKKVD KKSRPPPSKR 240 KVPRGRVTVL KEHPAMECHL SVDESESSEL QTEQATLVDD EELELSELQA GPNPLRCSAH 300 LSSSGRHGCP LCKDLLARFP PPSVKMKEPF STKPWDSSPE MVKKLFQVVR FVYTHFGSMD 360 VHPFTFDEFA QAFHDKESSL LGKVHVSLLK LLMLNTKRDS GDVFVPRSSK DSRFISFLNF 420 VREQEFDVNF WIKSLNSLTW VEILRQVLVA SGFGSDHHML NRNFFNKEKN QMVKYGLRPR 480 TLKGELFALL SKKGIGGLKV SELAKSPQIV DLNLSGTSEV EQLIFSTLSS DITLFEKIAS 540 SAYRLRVDPR IKGKENPKSD TEDSGTVDDD EDASSSGDEY DGPEELSFSE HESRIVRRKQ 600 KNEHKTMNKC SEIDESYSGE RWLLGLMEGE YSDLSIDEKL DCLVALMDVV SGAGSVPRLE 660 EPQSVLSNIQ RAQSHASGGK IKKSTRTIYQ SSDEYLNRPG SSHSLDTSMQ GQSGNRRSQD 720 YISESAANES STAFAHQPQI VLLGSDRRYN NYWLFLGPCR ADDPGHRRVY FESSEDGHWE 780 VIDSPQELLS LLSLLDIRGT REAHLLASMK KRQACLFEGM KKHLEDGNAV GVSASSDSSR 840 SETSTPKLSS GDGASPLSDI DNASVPTYLA DNLLSASSAI VIEAGRRGDE KILKWERLQA 900 LDKWIWTSFY SSLIAVKCGK RSFKESLVHC ESCHDLYWRD EKHCRICHST FEVGFDLEER 960 YAIHVATCRE PEDLYDVPNH KVLSSQLQAL KAAIHAIEAC MPESAFAGLW MKSSHNLWVR 1020 RLRRTSSLPE LLQVLVDFVG AMDEDWLYES SSTSFCSYLD NITVYFQTMP QTTSAVALWV 1080 VKLDALIAPY LVQTDPDRAL AEGSTKTNHQ PGRNY*

Sequence ? help Back to Top

Protein Sequence Length: 1116 aa Download sequence Send to blast

MMTNAGTKKS PLQIQMLEGF YSEVQYPKPD DMIEYASSVG LAYSQVRIWF KERRRKERRQ  60
MEAAGALMET QVSARSNGPR SMSLVGEKHA LRPQVLYPKD YILAKVFRKD GPSLGSEFDP  120
LPKSAHGHVR VADTTEYHSD QDQRVVKKRK IVECTDQGFT LPCQSNGPVR KHGMGKGLMT  180
VWHAMYSKNA EVQDVSNFID ETGCLRSLRP FDDSDGKLIQ KFFLPRKKVD KKSRPPPSKR  240
KVPRGRVTVL KEHPAMECHL SVDESESSEL QTEQATLVDD EELELSELQA GPNPLRCSAH  300
LSSSGRHGCP LCKDLLARFP PPSVKMKEPF STKPWDSSPE MVKKLFQVVR FVYTHFGSMD  360
VHPFTFDEFA QAFHDKESSL LGKVHVSLLK LLMLNTKRDS GDVFVPRSSK DSRFISFLNF  420
VREQEFDVNF WIKSLNSLTW VEILRQVLVA SGFGSDHHML NRNFFNKEKN QMVKYGLRPR  480
TLKGELFALL SKKGIGGLKV SELAKSPQIV DLNLSGTSEV EQLIFSTLSS DITLFEKIAS  540
SAYRLRVDPR IKGKENPKSD TEDSGTVDDD EDASSSGDEY DGPEELSFSE HESRIVRRKQ  600
KNEHKTMNKC SEIDESYSGE RWLLGLMEGE YSDLSIDEKL DCLVALMDVV SGAGSVPRLE  660
EPQSVLSNIQ RAQSHASGGK IKKSTRTIYQ SSDEYLNRPG SSHSLDTSMQ GQSGNRRSQD  720
YISESAANES STAFAHQPQI VLLGSDRRYN NYWLFLGPCR ADDPGHRRVY FESSEDGHWE  780
VIDSPQELLS LLSLLDIRGT REAHLLASMK KRQACLFEGM KKHLEDGNAV GVSASSDSSR  840
SETSTPKLSS GDGASPLSDI DNASVPTYLA DNLLSASSAI VIEAGRRGDE KILKWERLQA  900
LDKWIWTSFY SSLIAVKCGK RSFKESLVHC ESCHDLYWRD EKHCRICHST FEVGFDLEER  960
YAIHVATCRE PEDLYDVPNH KVLSSQLQAL KAAIHAIEAC MPESAFAGLW MKSSHNLWVR  1020
RLRRTSSLPE LLQVLVDFVG AMDEDWLYES SSTSFCSYLD NITVYFQTMP QTTSAVALWV  1080
VKLDALIAPY LVQTDPDRAL AEGSTKTNHQ PGRNY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g03303.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237104.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A2K2CK81	0.0	A0A2K2CK81_BRADI; Uncharacterized protein
STRING	MLOC_6327.3	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50
Representative plant	OGRP9161	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-137	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bradi4g03303.5.p
Entrez Gene	100825161