PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g03303.2.p | ||||||||
Common Name | BRADI_4g03303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-other | ||||||||
Protein Properties | Length: 1089aa MW: 122497 Da PI: 7.0113 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39 | 1.3e-12 | 8 | 59 | 6 | 57 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le ++ + +yp+ +++ e A+++gL +qV++WF+ rR ke++ Bradi4g03303.2.p 8 KKSPLQIQMLEGFYSEVQYPKPDDMIEYASSVGLAYSQVRIWFKERRRKERR 59 66899*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.459 | 1 | 60 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-13 | 2 | 64 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-12 | 6 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-13 | 7 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.53E-7 | 7 | 50 | No hit | No description |
Pfam | PF00046 | 6.4E-10 | 8 | 59 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 9.902 | 313 | 372 | IPR018501 | DDT domain |
SMART | SM00571 | 0.0068 | 313 | 372 | IPR018501 | DDT domain |
Pfam | PF02791 | 5.9E-7 | 315 | 367 | IPR018501 | DDT domain |
Pfam | PF15612 | 1.9E-5 | 592 | 623 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.4E-10 | 715 | 786 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1089 aa Download sequence Send to blast |
MMTNAGTKKS PLQIQMLEGF YSEVQYPKPD DMIEYASSVG LAYSQVRIWF KERRRKERRQ 60 MEAAGALMET QVSARSNGPR SMSLVGEKHA LRPQVLYPKD YILAKVFRKD GPSLGSEFDP 120 LPKSAHGHVR VADTTEYHSD QDQRVVKKRK IVECTDQGFT LPCQSNGPVR KHGMGKGCLR 180 SLRPFDDSDG KLIQKFFLPR KKVDKKSRPP PSKRKVPRGR VTVLKEHPAM ECHLSVDESE 240 SSELQTEQAT LVDDEELELS ELQAGPNPLR CSAHLSSSGR HGCPLCKDLL ARFPPPSVKM 300 KEPFSTKPWD SSPEMVKKLF QVVRFVYTHF GSMDVHPFTF DEFAQAFHDK ESSLLGKVHV 360 SLLKLLMLNT KRDSGDVFVP RSSKDSRFIS FLNFVREQEF DVNFWIKSLN SLTWVEILRQ 420 VLVASGFGSD HHMLNRNFFN KEKNQMVKYG LRPRTLKGEL FALLSKKGIG GLKVSELAKS 480 PQIVDLNLSG TSEVEQLIFS TLSSDITLFE KIASSAYRLR VDPRIKGKEN PKSDTEDSGT 540 VDDDEDASSS GDEYDGPEEL SFSEHESRIV RRKQKNEHKT MNKCSEIDES YSGERWLLGL 600 MEGEYSDLSI DEKLDCLVAL MDVVSGAGSV PRLEEPQSVL SNIQRAQSHA SGGKIKKSTR 660 TIYQSSDEYL NRPGSSHSLD TSMQGQSGNR RSQDYISESA ANESSTAFAH QPQIVLLGSD 720 RRYNNYWLFL GPCRADDPGH RRVYFESSED GHWEVIDSPQ ELLSLLSLLD IRGTREAHLL 780 ASMKKRQACL FEGMKKHLED GNAVGVSASS DSSRSETSTP KLSSGDGASP LSDIDNASVP 840 TYLADNLLSA SSAIVIEAGR RGDEKILKWE RLQALDKWIW TSFYSSLIAV KCGKRSFKES 900 LVHCESCHDL YWRDEKHCRI CHSTFEVGFD LEERYAIHVA TCREPEDLYD VPNHKVLSSQ 960 LQALKAAIHA IEACMPESAF AGLWMKSSHN LWVRRLRRTS SLPELLQVLV DFVGAMDEDW 1020 LYESSSTSFC SYLDNITVYF QTMPQTTSAV ALWVVKLDAL IAPYLVQTDP DRALAEGSTK 1080 TRTQACVR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g03303.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373981 | 0.0 | AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237104.1 | 0.0 | homeobox-DDT domain protein RLT3 isoform X1 | ||||
TrEMBL | A0A0Q3L189 | 0.0 | A0A0Q3L189_BRADI; Uncharacterized protein | ||||
STRING | MLOC_6327.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 1e-137 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g03303.2.p |