PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02996.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 375aa    MW: 42972.1 Da    PI: 6.1085
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02996.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-1731122199
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       ffk +  s  ++++ +++p kfa+++  +++  e+    l+ +sg++W v +  +k s+  ++++GW +F+ka++L+e+D ++F+++g+s+f 
  Bradi4g02996.2.p  31 FFKLM--SGDFEQS-ISIPDKFASNFirQMQIVEG--FDLKAQSGETWHVGV--TKVSNDLFFRSGWGDFAKAHELQENDLLLFTFTGNSSF- 115
                       77878..7777776.9*******877885454455..888899*********..**********************************9999. PP

                       .EEEEE-S CS
                B3  92 lvvkvfrk 99 
                         v +f++
  Bradi4g02996.2.p 116 -DVLIFDA 122
                       .9999986 PP
2B351.81.5e-16257340185
                       EEEE-..-HH.HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdv.lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f +vl +s+v +ks+ l++p +fa++h +   +s ++ l    + ++W v++  + +s ++  +k W +Fv +n+L+egD++vF+l+
  Bradi4g02996.2.p 257 FMTVLQTSSVqGKSKFLIIPMEFAADHLQR--KSHDILLVRpAREERWHVRYYQWSTSIGF-KGKSWAKFVCDNRLREGDVCVFELI 340
                       56667666661566889**********544..3334555553888*******668888886.689********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-1928127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.63428123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-1929125IPR015300DNA-binding pseudobarrel domain
CDDcd100178.01E-1730121No hitNo description
PfamPF023624.7E-1531122IPR003340B3 DNA binding domain
SMARTSM010191.3E-1031123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-20249346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-19250340IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-16255340No hitNo description
PfamPF023623.0E-14257340IPR003340B3 DNA binding domain
SMARTSM010196.2E-10257348IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52258362IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDEEGKGRCE RCREWQEHFY WEHMDGRKMR FFKLMSGDFE QSISIPDKFA SNFIRQMQIV  60
EGFDLKAQSG ETWHVGVTKV SNDLFFRSGW GDFAKAHELQ ENDLLLFTFT GNSSFDVLIF  120
DASGCEKLSS LFSGKMRKHF DDLGGQQVEQ YSLIDDSDDS DDNDSDEDDS ESVPSLLVDS  180
PHNKASTSKK FSAKTKPRTE LSESPNSSSY DDVKHETSEE DESDHEPYYS RSAKRLLDTE  240
KREITGLASI QPDNPAFMTV LQTSSVQGKS KFLIIPMEFA ADHLQRKSHD ILLVRPAREE  300
RWHVRYYQWS TSIGFKGKSW AKFVCDNRLR EGDVCVFELI ICARRKKMKK TAMTIIAVHV  360
ARRRKADGRF VAVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344364RKKMKKTAMTIIAVHVARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02996.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758594.10.0B3 domain-containing protein LOC_Os12g40090
SwissprotQ2QMT21e-110Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0Q3EEH00.0A0A0Q3EEH0_BRADI; Uncharacterized protein
STRINGBRADI4G02990.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-27B3 family protein