PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g02950.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 384aa MW: 43802.6 Da PI: 8.2191 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.9 | 1.4e-16 | 45 | 125 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + +++p kfa++++g+ +k tl+ +sg++W+v + +k ++ ++ +GW F+ka++L+e D++ Fk +g+ +f v +f++ Bradi4g02950.3.p 45 Q-QSISIPEKFANNFSGQ--IDKGCTLKVPSGETWRVGI--EKIADKLFFVSGWDAFAKAHELQEHDILFFKCSGSGSF--DVLIFDA 125 3.349*******888777..44558999***********..*******************************8876666..9999986 PP | |||||||
2 | B3 | 39.4 | 1.1e-12 | 285 | 369 | 13 | 94 |
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS...SEE..EE CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr...sefelvv 94 +++ +++ kfa++h +g ++ +l l+ + ++W vk+ y +s r + + W +Fv++n+L+eg +++F+l g+ +++++++ Bradi4g02950.3.p 285 LCLQIISSKFAADHlEGR--SQDMLLLRPNRKEKWYVKYYYHASSTRGFNCQRWVKFVRDNKLREGYICIFELLkGTrkaTTATMMI 369 466699********6444..333666777888*******99888888666679*******************652332023344455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.47E-21 | 29 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.929 | 33 | 126 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.60E-16 | 35 | 124 | No hit | No description |
SMART | SM01019 | 4.8E-9 | 36 | 126 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-20 | 36 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.7E-14 | 44 | 125 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-16 | 249 | 370 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-15 | 251 | 369 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.24E-15 | 255 | 373 | No hit | No description |
SMART | SM01019 | 1.3E-5 | 272 | 375 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-11 | 286 | 373 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.361 | 289 | 375 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MAAAGKMMGE KGGCGRCREW QEHYYWEHMD VSKIRFSKIM AGDFQQSISI PEKFANNFSG 60 QIDKGCTLKV PSGETWRVGI EKIADKLFFV SGWDAFAKAH ELQEHDILFF KCSGSGSFDV 120 LIFDASGCEK VSSFFTDKKG TNMHKHFDHI VSQQAEEHYL LSDSGDVNMP PSPLVGSPHK 180 ASASNKPSGK TKPREESESP NDSDYRVKHE LTQEENDSDD EDTDSNKYYS RFANYLTLGE 240 REEIFGLASI QPGNPIFVAV LQKSHVRHRN NFLQLRSTGL NQKMLCLQII SSKFAADHLE 300 GRSQDMLLLR PNRKEKWYVK YYYHASSTRG FNCQRWVKFV RDNKLREGYI CIFELLKGTR 360 KATTATMMIH VIRKVDDRFV LLG* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g02950.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237091.1 | 0.0 | B3 domain-containing protein Os12g0592300 | ||||
Swissprot | Q2QMT2 | 1e-154 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A2K2CK63 | 0.0 | A0A2K2CK63_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G02950.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 | Representative plant | OGRP6299 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-30 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g02950.3.p |