PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02410.1.p
Common NameBRADI_4g02410, LOC100828344
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 410aa    MW: 44793.6 Da    PI: 5.5351
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR452.2e-1498135340
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       +++C+Ckks+Clk+YC Cfa+g++Cse C Ce C Nk 
  Bradi4g02410.1.p  98 CRTCSCKKSRCLKLYCVCFASGSHCSELCGCEPCYNKP 135
                       789*********************************96 PP
2TCR46.85.9e-15174209439
               TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                       ++C+Ckks ClkkYC+C++ g+ Cs +C+C+dCkN 
  Bradi4g02410.1.p 174 RKCTCKKSGCLKKYCDCYQGGAGCSINCRCDDCKNP 209
                       79*********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-996137IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.52797211IPR005172CRC domain
PfamPF036382.8E-1099134IPR005172CRC domain
SMARTSM011141.4E-13171212IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.8E-11174208IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDSTDPGEPP NPEPQLEPSG SEAPPPPVHP PPPAPVPAVA TDPAPAEAAE PSPMPAPAPA  60
PAPAPPSAVW SAVSLPPAEA NGGSDRKKKR KADEGEGCRT CSCKKSRCLK LYCVCFASGS  120
HCSELCGCEP CYNKPIHGVP RNTPALPLKV VQTAEAGQDL AEQLIRSPMD LVRRKCTCKK  180
SGCLKKYCDC YQGGAGCSIN CRCDDCKNPY GRKVGVILDG KSMLPSPTPN ERNGTEADSS  240
DDDDDEDDYY MNRPLSPIPP SPVSRESSFQ QETLVGVEVH TMNGHLYPKP LTQVRPESWQ  300
LSRRPTEEPR GEPWRYLRRP SEDGTSDVME GHAEPKFQRD NSNKQPESHL DRFSIPRCIE  360
VMNAMEDLSP IDKSLAPDIF LDASNREIFL SLSVDIRTMW LKRKMRNLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237057.20.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 3
TrEMBLI1IGP00.0I1IGP0_BRADI; Uncharacterized protein
STRINGBRADI4G02410.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Representative plantOGRP1307345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-41TESMIN/TSO1-like CXC 2