PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g02390.4.p | ||||||||
Common Name | BRADI_4g02390, LOC100829642 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CPP | ||||||||
Protein Properties | Length: 772aa MW: 82741 Da PI: 7.7266 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.3 | 9.5e-16 | 463 | 502 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + Bradi4g02390.4.p 463 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 502 689**********************************976 PP | |||||||
2 | TCR | 52 | 1.4e-16 | 548 | 586 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN Bradi4g02390.4.p 548 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNA 586 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.1E-15 | 462 | 503 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.186 | 463 | 588 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.2E-12 | 465 | 500 | IPR005172 | CRC domain |
SMART | SM01114 | 2.5E-17 | 548 | 589 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.7E-12 | 550 | 586 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MSFPPLSKGF IWISWPDTAY DSPVFNFINN LSPIPPPKPQ ASAHNVQLFK SSDLAPVSSI 60 FASPHVNPAK ESKLVVRDDP VQLPQDSNSP NSVRTRLGTA IRLIKSKNIV SENCSFTCHL 120 SQAPIDSSIN TSISTSNLPQ PIQFVGGSAE CDKNQNAGGD KDLSTDQECP VEGVFFDHTG 180 IDKMDSSQPG RIVHENQLCE QSRDGFVAYD EDYLATEELN SDMLRLAPPF DAETQLMNGT 240 LNADNAHSGT LLTDGSSGSY INNAAHDPHL YWDGAVDGSA MDYTPQLLPG VCQNQLVSND 300 QLCNALTEPS NHMPMDQSAL SQHMRGTRRR CLFNEKAGAV NKAAKKTSDR HSANTTTPRC 360 KTSSSDHNSK PMKTPPCALP GIGLHLNALA TIPKDKIVPY AAQSSTIQAS NFPSAVSSSP 420 ATSEPNTANE DSSQAIVVAN ADESGQGSPK KKRHKFDNGD GTSCKRCSCK KSKCLKLYCE 480 CFHAGVFCSE PCSCQGCLNK PSNMETVLST REQIESRNPL AFAPKVIRTS EPGQELGEQS 540 NKTPASARHK RGCNCKKSSC LKKYCECFQG GVGCSISCRC EGCKNAFGRR EGVVLLSIEQ 600 AKQGSVENIA CVKEETSEND NQLVIYQAAN PASAENVLTT PSVEDIRPLS ALPPSSSKRP 660 RSSTKLIGHS SRLCNSQAPL KTDILLSPFE SYAEMVLGDG ASDVLKGGSS PQTSVKVVSP 720 NKKRISPPRI GTGLSPICKN GRKLILKSIP SFPSLCGDVN KVDPKTSSPA S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-15 | 467 | 585 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 4e-15 | 467 | 585 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g02390.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310561.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X2 | ||||
Swissprot | F4JIF5 | 2e-97 | TCX2_ARATH; Protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A2K2CK20 | 0.0 | A0A2K2CK20_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G02390.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-79 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g02390.4.p |
Entrez Gene | 100829642 |
Publications ? help Back to Top | |||
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