PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g01950.1.p
Common NameBRADI_4g01950, LOC100845536
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 442aa    MW: 47543.4 Da    PI: 8.2306
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g01950.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.6e-32160218260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +DgynWrKYGqK+vkgse prsYY+Ct+agC++kkkvers  d++v++i+Y+g H+h+k
  Bradi4g01950.1.p 160 EDGYNWRKYGQKQVKGSEDPRSYYKCTHAGCSMKKKVERSLADGRVTQIVYKGAHDHPK 218
                       8********************************************************85 PP
2WRKY106.81.1e-33315373159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Bradi4g01950.1.p 315 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERASHDARAVITTYEGKHNHD 373
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-29150219IPR003657WRKY domain
PROSITE profilePS5081127.439154219IPR003657WRKY domain
SuperFamilySSF1182902.09E-25156219IPR003657WRKY domain
SMARTSM007745.8E-35159218IPR003657WRKY domain
PfamPF031061.2E-24160217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-37300375IPR003657WRKY domain
SuperFamilySSF1182902.09E-29307375IPR003657WRKY domain
PROSITE profilePS5081138.17310375IPR003657WRKY domain
SMARTSM007748.0E-40315374IPR003657WRKY domain
PfamPF031064.0E-26316373IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAAASSTTGS LDHHAAGFTF TPPPFITSFT DLLSGSPRTG VPKFKSAQPP SLPISPSHLS  60
SYFSIPAGLL DSPVLLDYSN ILASPTTGAI PASQQSYDWK KASQPEESRG SFADFSFQAV  120
DTNAQTNSFP SFKEQQQQQV SKSVVPASNS NNKSNKQQLE DGYNWRKYGQ KQVKGSEDPR  180
SYYKCTHAGC SMKKKVERSL ADGRVTQIVY KGAHDHPKPL STRRNNSSSS SVTVAADHQP  240
EHSAATPENS SVTFGDDDEA AADNGAASHR SDGAEPEPKR WKEDADNNEG SSSGGGKPVR  300
EPRLVVQTLS DIDILDDGFR WRKYGQKVVK GNPNPRSYYK CTTPGCPVRK HVERASHDAR  360
AVITTYEGKH NHDVPLGRGA ARPPAVAASS SSSDGAMMIR TSAAAGHGHG HGQQRGVPYT  420
LEMLAKDEPR DDLFVDSLLL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37147375577Probable WRKY transcription factor 4
2lex_A3e-37147375577Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g01950.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1904361e-105AB190436.1 Oryza sativa Japonica Group OsWRKY53 mRNA for transcription factor OsWRKY53, complete cds.
GenBankAK1211901e-105AK121190.1 Oryza sativa Japonica Group cDNA clone:J023086B03, full insert sequence.
GenBankAY6769291e-105AY676929.1 Oryza sativa (indica cultivar-group) transcription factor WRKY53 (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577478.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-108WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLI1IGI70.0I1IGI7_BRADI; Uncharacterized protein
STRINGBRADI4G01950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.17e-82WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]