PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g01770.1.p
Common NameBRADI_4g01770, LOC100828330
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 321aa    MW: 34969.5 Da    PI: 9.4671
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g01770.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.8e-11555146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                      +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
  Bradi4g01770.1.p  5 KQKWTAEEEAALKAGINKHGAGKWRTILKDPEfssvlRYRSNVDLKDKWRN 55
                      79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.427161IPR017930Myb domain
SuperFamilySSF466891.2E-15259IPR009057Homeodomain-like
SMARTSM007173.2E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-13556IPR009057Homeodomain-like
PfamPF002496.2E-8556IPR001005SANT/Myb domain
CDDcd116609.41E-20657No hitNo description
PROSITE profilePS5150420.534114185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.0E-13114187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005268.2E-8115180IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.59E-13115189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.4E-7122178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGI NKHGAGKWRT ILKDPEFSSV LRYRSNVDLK DKWRNMNVTV  60
NASGSRNDKA RTAPTAKKPR SAPKQEGPST ALAAITSDGD DDVADVMPLA TGSAKKSLSR  120
LENIILEAVK SLNEPTGSYK TAVSNYIEEQ YWPPADFDHV LSAKLNELTA TGKLIKVHRK  180
YRIAPSSSFL EGRSSKMLLL EDIQKEPNKV DRAERVERSE RVERAERVER LERVERDGLV  240
AQTKSQVDAE LARMRNMTAE EAAAAAARAV AEADAIMAEA EAAVREAEAA EADAVAAQAF  300
AEAAMLTLKN RSSAKLIIRG *
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g01770.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237024.10.0single myb histone 5
SwissprotC0HIA31e-100SMH6_MAIZE; Single myb histone 6
TrEMBLI1IGG30.0I1IGG3_BRADI; Uncharacterized protein
STRINGBRADI4G01770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-62telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]