PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g00920.3.p | ||||||||
Common Name | BRADI_4g00920, LOC100828744 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 364aa MW: 38297.8 Da PI: 7.0648 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.6 | 2.9e-15 | 171 | 217 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR++iN++f eL +++P + kK++Ka+iL Av+Y+++Lq Bradi4g00920.3.p 171 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 217 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.955 | 167 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-20 | 171 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.11E-18 | 172 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-13 | 172 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-14 | 172 | 221 | No hit | No description |
SMART | SM00353 | 7.7E-17 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MEESSFFMQW ALNTLDQNQL PSSSSAAPPP PPPYDGGDTF AAAAASFPSL HALRQSGRGG 60 RNCLQVDVHR PAAASSWSGG ASSDDSPAAA AAMDHDASPA TAAGWSPHTA RARTSGGRGG 120 RQMSWNFGAA SAQPTADIII SPPPPAPAAS AAPARSGGRQ AASSSPGPVQ DHIIAERRRR 180 EKINQRFIEL STVIPGLKKM DKATILGDAV KYVRELQDKV KTLEDEDDKQ QHTSTTIQYS 240 AVLVNKKKTC LASLAASSDE AGGESSESQN GSGLPEIEVR LSEKSVLVRI HCESAKGMLV 300 RVLAEVESLR LAITHTSVMP FPAATAIITI TAKVEEGFNS TVEEIVRKLN SALHRHYTGN 360 GEC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-14 | 171 | 226 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 4e-14 | 171 | 226 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 4e-14 | 171 | 226 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 4e-14 | 171 | 226 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 4e-14 | 171 | 226 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 4e-14 | 171 | 226 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 4e-14 | 171 | 226 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 4e-14 | 171 | 226 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 180 | ERRRRE |
2 | 176 | 181 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g00920.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579101.1 | 0.0 | transcription factor bHLH18 | ||||
Refseq | XP_014758054.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | I1IG63 | 0.0 | I1IG63_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G00920.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g00920.3.p |
Entrez Gene | 100828744 |