PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g00920.2.p
Common NameBRADI_4g00920, LOC100828744
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 364aa    MW: 38297.8 Da    PI: 7.0648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g00920.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.62.9e-15171217455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+++Lq
  Bradi4g00920.2.p 171 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 217
                       5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-20171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-18172233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-13172217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-14172221No hitNo description
SMARTSM003537.7E-17173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEESSFFMQW ALNTLDQNQL PSSSSAAPPP PPPYDGGDTF AAAAASFPSL HALRQSGRGG  60
RNCLQVDVHR PAAASSWSGG ASSDDSPAAA AAMDHDASPA TAAGWSPHTA RARTSGGRGG  120
RQMSWNFGAA SAQPTADIII SPPPPAPAAS AAPARSGGRQ AASSSPGPVQ DHIIAERRRR  180
EKINQRFIEL STVIPGLKKM DKATILGDAV KYVRELQDKV KTLEDEDDKQ QHTSTTIQYS  240
AVLVNKKKTC LASLAASSDE AGGESSESQN GSGLPEIEVR LSEKSVLVRI HCESAKGMLV  300
RVLAEVESLR LAITHTSVMP FPAATAIITI TAKVEEGFNS TVEEIVRKLN SALHRHYTGN  360
GEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14171226863Transcription factor MYC2
5gnj_B4e-14171226863Transcription factor MYC2
5gnj_E4e-14171226863Transcription factor MYC2
5gnj_F4e-14171226863Transcription factor MYC2
5gnj_G4e-14171226863Transcription factor MYC2
5gnj_I4e-14171226863Transcription factor MYC2
5gnj_M4e-14171226863Transcription factor MYC2
5gnj_N4e-14171226863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERRRRE
2176181RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g00920.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579101.10.0transcription factor bHLH18
RefseqXP_014758054.10.0transcription factor bHLH18
TrEMBLI1IG630.0I1IG63_BRADI; Uncharacterized protein
STRINGBRADI4G00920.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-36bHLH family protein