PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g00740.4.p | ||||||||
Common Name | BRADI_4g00740, LOC100826682 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TALE | ||||||||
Protein Properties | Length: 651aa MW: 72259.3 Da PI: 6.1083 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.3 | 6.1e-09 | 409 | 446 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + Bradi4g00740.4.p 409 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 446 664459******************************88 PP | |||||||
2 | BELL | 120.3 | 8.6e-39 | 272 | 343 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag gsakpYt++Al++iSrhFrcLkdai eqi Bradi4g00740.4.p 272 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQNVVSSFDVVAGPGSAKPYTAVALQTISRHFRCLKDAINEQI 343 689********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-56 | 196 | 341 | IPR006563 | POX domain |
Pfam | PF07526 | 2.2E-50 | 202 | 339 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.357 | 387 | 450 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-28 | 389 | 460 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.0E-9 | 390 | 454 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.80E-12 | 390 | 451 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-17 | 391 | 457 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 407 | 446 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MATYYSSPGS ERESQDMYSR DQGSASYPMS SALGNLLYLN NPSSGPYTEF SGILQSQQNC 60 MEMPGHGHHS AMSQDSSVRE SDMLASHHGQ RSFGHVKDMK NEMLMHIMDG GQSGGAELIH 120 DDSHNGAQFE FGVLNNHGSS NVPSGQGQGQ GLSLSLNTQI MAPSLPYWSI KPDMLTPNSY 180 HESLRVDDIR MKTMQSEASR AIRHSRYLKA AQEVLDEVVN VWKNIKQKAQ KEQAEPEKAD 240 GKETDGGPKS EGVSSNPQES GANAAPELST AEKQELQNKM AKLMAMLDEV DRKYKHYYHQ 300 MQNVVSSFDV VAGPGSAKPY TAVALQTISR HFRCLKDAIN EQINVIRKKL GEEENSSGKE 360 GKLTRLRYID QQLRQQRAFQ QYGMIPQNAW RPQRGLPENS VTVLRAWLFE HFLHPYPKDS 420 EKLMLARQTG LTRSQISNWF INARVRLWKP MIEDMYKEET GDLEQDSNSS SDNVPRSKNK 480 VACSEENEDL KNARARVCET SQLSESRASI GAMNAGGAPV GFQHEANPDD SFMNLMMKDQ 540 RSGEADGGLL LHNAMAQHSD ESARFMAYHL AELGRYGNGN VSLTLGLQHS GSSLSVPNAQ 600 ANFPGVTDDD MYNTAAPLGV SIASSDYESM NQMDQRQRFE QSPLLHDFVA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 4e-16 | 396 | 453 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-16 | 396 | 453 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g00740.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575568.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_010236965.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_010236966.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | I1IG43 | 0.0 | I1IG43_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G00740.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-110 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g00740.4.p |
Entrez Gene | 100826682 |