PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g60352.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 252aa MW: 25489.6 Da PI: 9.8952 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.2 | 8.1e-40 | 30 | 132 | 2 | 103 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaak 92 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++ +++s +ss+s++s+++a++ Bradi3g60352.1.p 30 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFStsSPSSLRSSNSTHSHSAAQA 122 789*************************************************************99999888666666666666444443333 PP TCP 93 saakskksqks 103 + + ++ Bradi3g60352.1.p 123 QP-LGAGGAHQ 132 33.22222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.9E-34 | 36 | 126 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 36 | 90 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MTTRPDGGGG AAEKQMVPVA AAANGNGALA VRKAPSKDRH SKVDGRGRRI RMPIICAARV 60 FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGSGTTPASF STSSPSSLRS SNSTHSHSAA 120 QAQPLGAGGA HQHHHLLPHA APFILGKRVR GGEDDEDGHG NDQAAAVSMG PAPGFWALPA 180 RAADFGQLWS FAAAPEMMVA AAAPAMAGEA SAARVGNYLP MGQGVNLIAS LGGPGPAAGP 240 PAGRAEEEAA R* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g60352.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374835 | 7e-96 | AK374835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077J21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236169.2 | 1e-179 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 3e-71 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2K2D604 | 1e-178 | A0A2K2D604_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G60350.1 | 4e-86 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP8514 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-39 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g60352.1.p |