PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g60120.1.p | ||||||||
Common Name | BRADI_3g60120, LOC100823681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 380aa MW: 41780.5 Da PI: 4.3533 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.3e-19 | 94 | 143 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp+ k r++lg+f +aeeAa+a++a +++++g Bradi3g60120.1.p 94 QFRGIRQRP-WGKWAAEIRDPN---KGVRVWLGTFNSAEEAARAYDAEARRIRG 143 69*******.**********93...25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.4E-36 | 94 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-21 | 94 | 152 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 94 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.22E-31 | 94 | 152 | No hit | No description |
PROSITE profile | PS51032 | 23.169 | 94 | 151 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 95 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 95 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 117 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MCGGAILTDL KRPPAVSRRL AEGLLWPEKK KVCWKGEEDD FEADFGGFEV VDEDLEFGGE 60 EEEAGDDDVV EIKPPPVKRA FTGERSAKRK RKNQFRGIRQ RPWGKWAAEI RDPNKGVRVW 120 LGTFNSAEEA ARAYDAEARR IRGNKAKVNF PEEPRAAQKR RAGPAAAKVP KSRVEQKPNV 180 KPAVNNLANT NASAYPSADF ASNKPFVQPD NKPFVQSDDL SFFQPDDLPF VQPDDMPFVP 240 AMNSAVPIGA PCMNLYSDQG SNSFGCSDLG WDCDTKTPDT TSVAPISTIV EGFEYAVVKG 300 NTQDSVVPPV METNTVDHTN VLETNPVDPT SGLADLEPLL KFLLEEDAGE SIDSFLNLDE 360 SQDVNGLWSF DDLISSDFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 93 | 151 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-19 | 94 | 151 | 5 | 63 | ATERF1 |
3gcc_A | 2e-19 | 94 | 151 | 5 | 63 | ATERF1 |
5wx9_A | 5e-19 | 93 | 153 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g60120.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100982 | 1e-130 | FP100982.1 Phyllostachys edulis cDNA clone: bphylf055p09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236158.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 1e-134 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A2K2D5Y3 | 0.0 | A0A2K2D5Y3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G60120.3 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-34 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g60120.1.p |
Entrez Gene | 100823681 |