PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g60018.1.p
Common NameBRADI_3g60018, LOC104584326
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 217aa    MW: 22764.1 Da    PI: 4.6811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g60018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.1e-162473255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr++k +g+Wv+eIr p++   r r++lg+++ +++Aa+a +aa  +l+g
  Bradi3g60018.1.p 24 KYKGVRRRK-WGKWVSEIRLPNS---RERVWLGSYDAPDKAARAFDAAFVCLRG 73
                      8*****998.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-262386IPR001471AP2/ERF domain
SMARTSM003803.4E-292490IPR001471AP2/ERF domain
CDDcd000182.78E-232486No hitNo description
PROSITE profilePS5103221.2982484IPR001471AP2/ERF domain
PfamPF008473.9E-92472IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-172486IPR016177DNA-binding domain
PRINTSPR003671.8E-82536IPR001471AP2/ERF domain
PRINTSPR003671.8E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSSSPETKDA DNSAGEGSGE RGRKYKGVRR RKWGKWVSEI RLPNSRERVW LGSYDAPDKA  60
ARAFDAAFVC LRGAHAPGAE LNFPDSPPPL TRRLDAAAAV DPQEVQAAAL SHANRAGPTV  120
VSASDGPSSR PVPAAMAMDD VLGSEAGVTA GSEDGSGIDW RPAMAPLYSP TGWPAGNAYD  180
FLHVPSTPLP FGDDEDMEDQ AGSSHAAMAS LWSFDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-121284272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g60018.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236912.11e-154ethylene-responsive transcription factor ERF017
SwissprotQ84QC23e-32ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0Q3I8D31e-153A0A0Q3I8D3_BRADI; Uncharacterized protein
STRINGTraes_6DL_FA861D610.24e-64(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-15ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]