PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g59420.2.p | ||||||||
Common Name | BRADI_3g59420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Nin-like | ||||||||
Protein Properties | Length: 152aa MW: 17979.9 Da PI: 10.4695 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 78.6 | 6.6e-25 | 21 | 69 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++le++s+yF +p+k+AA eL+v++T+LKr CR++ I RWPhRk+ksl Bradi3g59420.2.p 21 SLRLEQVSQYFCMPLKQAAEELKVGQTTLKRSCRELRILRWPHRKVKSL 69 799********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.426 | 1 | 90 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.4E-21 | 22 | 69 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MEKATKNEEH LSDGSQREKP SLRLEQVSQY FCMPLKQAAE ELKVGQTTLK RSCRELRILR 60 WPHRKVKSLQ TLIENVQELE KDDVLGRSEK IRAVVQILQQ RQKLMEERPA GVVELDKETR 120 IFMQACYKEM YNRRRKGVKF AWMRSDRAGF R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g59420.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756080.1 | 1e-108 | protein RKD1 | ||||
TrEMBL | A0A2K2D5V5 | 1e-106 | A0A2K2D5V5_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G59420.1 | 1e-105 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 | Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 4e-26 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g59420.2.p |