PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g59410.3.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 268aa MW: 31147.7 Da PI: 6.2629

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g59410.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.8	2.4e-24	150	197	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s++F pik+AA eL+v+lT LKr+CR++GI+RWPhRk++sl Bradi3g59410.3.p 150 LTFELVSQHFCVPIKQAAAELKVGLTQLKRRCRELGIPRWPHRKMRSL 197 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	131	218	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-21	150	197	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MNVFPFKSSA SINCSGHLWL RLPRSAMLQL PPMEDFRFYE EEGYYFRDLK FHNDEYFQDF 60 SIEYLQEESP FFSTQHRLCT STATATQSYF CQDELYALFQ GDILSLWAAL EEEAPCKSEK 120 ELELEQKLGP DAVEKTRMSN GPPEQEKPLL TFELVSQHFC VPIKQAAAEL KVGLTQLKRR 180 CRELGIPRWP HRKMRSLQTL IDNVQELGRG TGEDGGMTKI VVEMLQQTKK LMEERPGDVE 240 LDHTTKMLRQ KCFKENYKRK RLMALQG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g59410.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756209.2	0.0	protein RKD1
TrEMBL	A0A2K2D5T2	0.0	A0A2K2D5T2_BRADI; Uncharacterized protein
STRING	BRADI3G59410.1	1e-169	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-32	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Bradi3g59410.3.p