PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g59320.2.p | ||||||||
Common Name | LOC100833697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 347aa MW: 35591.6 Da PI: 10.3033 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.1 | 1.8e-39 | 11 | 193 | 1 | 137 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s Bradi3g59320.2.p 11 AAPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSVVpahl 103 689*******************************************************************99977777777777333336667 PP TCP 89 ...........................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137 a++sa + + +s + l+++ a+ + r++++m+++++++ Bradi3g59320.2.p 104 rglpspgaaqaaaaarfigsagarpdawdrvvglgfpppsdaaPASASASPLLLNFHSGSVGLDVSSPNA--ADLSRKRRWEQEMQQQQQQQ 193 7777777778888888899999999999999999998888875222333355566666664444444222..22222224444444444433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-42 | 16 | 193 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.861 | 18 | 72 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MQLAAARPNK AAPKRTSTKD RHTKVEGRGR RIRMPALCAA RVFQLTRELG HKTDGETIEW 60 LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSSLSVVP AHLRGLPSPG AAQAAAAARF 120 IGSAGARPDA WDRVVGLGFP PPSDAAPASA SASPLLLNFH SGSVGLDVSS PNAADLSRKR 180 RWEQEMQQQQ QQQQQQQQYQ QQMAGYTTPQ QSQMPSGTVW MVPSGSNSTQ GGAPSSGGGG 240 GESIWTFPAQ MGSAGVYRGS GLHFMNFPAA PMALLPGSAQ QLGLGPVGAG AGGGGAGEGH 300 MGILAALNAY RAQAAAPTDA GASSHSQQQQ HGGGGERHES MSTSES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00224 | DAP | Transfer from AT1G69690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g59320.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364135 | 2e-96 | AK364135.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2022A18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570652.1 | 0.0 | transcription factor TCP15 | ||||
Swissprot | Q93Z00 | 6e-47 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A0Q3MCB5 | 0.0 | A0A0Q3MCB5_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G59320.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 | Representative plant | OGRP2699 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 5e-41 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g59320.2.p |
Entrez Gene | 100833697 |
Publications ? help Back to Top | |||
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