PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g59300.3.p
Common NameBRADI_3g59300
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 372aa    MW: 40659.2 Da    PI: 5.8012
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g59300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.13e-15186245155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++g+++A+++d  +   g  ++ k+++lg+++t+ +Aa+a++ a++k++g
  Bradi3g59300.3.p 186 SCFHGVTRHRWSGKYEAHLWDsSCRvEGrrRKgKQVYLGSYDTELKAARAYDVAALKYWG 245
                       789******************877786666336**********99*************97 PP
2AP246.68.3e-15288338155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++ k +grW A+I       g ++ ++lg+f t+eeAa+a++ a+ +++g
  Bradi3g59300.3.p 288 SVYRGVTRQK-DGRWQARIGLiA---G-TRDIYLGTFKTEEEAAEAYDIAAIEIRG 338
                       78*****888.9******88832...2.5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-16186255IPR016177DNA-binding domain
PfamPF008473.3E-12186245IPR001471AP2/ERF domain
SMARTSM003803.8E-24187259IPR001471AP2/ERF domain
PROSITE profilePS5103218.123187253IPR001471AP2/ERF domain
CDDcd000187.51E-18188255No hitNo description
Gene3DG3DSA:3.30.730.103.4E-15188253IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17288347IPR016177DNA-binding domain
PfamPF008477.8E-9288338IPR001471AP2/ERF domain
CDDcd000183.25E-23288346No hitNo description
Gene3DG3DSA:3.30.730.103.5E-19289346IPR001471AP2/ERF domain
SMARTSM003801.4E-26289352IPR001471AP2/ERF domain
PROSITE profilePS5103218.057289346IPR001471AP2/ERF domain
PRINTSPR003672.0E-7290301IPR001471AP2/ERF domain
PRINTSPR003672.0E-7328348IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MMKSGEEVNL DRSLEEKAAG EPGDEGKIQR SPSINLNSLP PMAAGTTEVG VLQSTVESGG  60
NDASKVNGDG FSGVDQKLVP KNEKVDEGEV QGCADVRNNL LEPLNSENRI EEKDASVNAL  120
HNEGRADGGG DHKRVQVLSV VKKDESEEEI GNSINPVTVA GYREEKGAVG STSGITAVRP  180
AASRSSCFHG VTRHRWSGKY EAHLWDSSCR VEGRRRKGKQ VYLGSYDTEL KAARAYDVAA  240
LKYWGLNTKL NFSISEYEKE LEETKDMSPE ECVTYLRRRS SCFSRGASVY RGVTRQKDGR  300
WQARIGLIAG TRDIYLGTFK TEEEAAEAYD IAAIEIRGKN AVTNFDRNNY IDKGMHCIEG  360
AGLKLLATKP E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212219GRRRKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g59300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570650.10.0AP2-like ethylene-responsive transcription factor PLT2
RefseqXP_014756565.10.0AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A0Q3IP120.0A0A0Q3IP12_BRADI; Uncharacterized protein
STRINGBRADI3G59300.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-69AP2 family protein