PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g59300.1.p | ||||||||
Common Name | BRADI_3g59300, LOC100833081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 373aa MW: 40815.4 Da PI: 6.045 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48 | 3e-15 | 186 | 245 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++g+++A+++d + g ++ k+++lg+++t+ +Aa+a++ a++k++g Bradi3g59300.1.p 186 SCFHGVTRHRWSGKYEAHLWDsSCRvEGrrRKgKQVYLGSYDTELKAARAYDVAALKYWG 245 789******************877786666336**********99*************97 PP | |||||||
2 | AP2 | 49.6 | 9.9e-16 | 288 | 339 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++ k+grW A+I g ++ ++lg+f t+eeAa+a++ a+ +++g Bradi3g59300.1.p 288 SVYRGVTRRQKDGRWQARIGLiA---G-TRDIYLGTFKTEEEAAEAYDIAAIEIRG 339 78****************88832...2.5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.42E-16 | 186 | 255 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-12 | 186 | 245 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.123 | 187 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-24 | 187 | 259 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.88E-18 | 188 | 255 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-15 | 188 | 253 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-5 | 188 | 199 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.4E-10 | 288 | 339 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-17 | 288 | 348 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.08E-22 | 288 | 347 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-19 | 289 | 347 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-25 | 289 | 353 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.65 | 289 | 347 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-5 | 329 | 349 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MMKSGEEVNL DRSLEEKAAG EPGDEGKIQR SPSINLNSLP PMAAGTTEVG VLQSTVESGG 60 NDASKVNGDG FSGVDQKLVP KNEKVDEGEV QGCADVRNNL LEPLNSENRI EEKDASVNAL 120 HNEGRADGGG DHKRVQVLSV VKKDESEEEI GNSINPVTVA GYREEKGAVG STSGITAVRP 180 AASRSSCFHG VTRHRWSGKY EAHLWDSSCR VEGRRRKGKQ VYLGSYDTEL KAARAYDVAA 240 LKYWGLNTKL NFSISEYEKE LEETKDMSPE ECVTYLRRRS SCFSRGASVY RGVTRRQKDG 300 RWQARIGLIA GTRDIYLGTF KTEEEAAEAY DIAAIEIRGK NAVTNFDRNN YIDKGMHCIE 360 GAGLKLLATK PE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 219 | GRRRKGKQ |
2 | 276 | 297 | RRRSSCFSRGASVYRGVTRRQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g59300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570650.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Refseq | XP_014756565.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | I1IFA1 | 0.0 | I1IFA1_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G59300.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11888 | 29 | 33 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 4e-71 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g59300.1.p |
Entrez Gene | 100833081 |