PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g58980.1.p
Common NameBRADI_3g58980, LOC100825824
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 316aa    MW: 33647.5 Da    PI: 7.6501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g58980.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18155204255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ ae+Aa a+++a+ +l+g
  Bradi3g58980.1.p 155 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDAAEDAALAYDKAAFRLRG 204
                       59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.93E-31154214No hitNo description
Gene3DG3DSA:3.30.730.109.8E-32155213IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22155213IPR016177DNA-binding domain
SMARTSM003803.0E-36155218IPR001471AP2/ERF domain
PROSITE profilePS5103222.813155212IPR001471AP2/ERF domain
PRINTSPR003673.1E-10156167IPR001471AP2/ERF domain
PfamPF008473.4E-12156204IPR001471AP2/ERF domain
PRINTSPR003673.1E-10178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAAAIDMYKY NSSSAHQIAS ASDQQELMKA LEPFIRSASS NPYSYNYYPS PSSSSSSMTQ  60
DSSYITTNPS PYASFATSPV PTTTALPPLY SSAGVNGPIG LAHLGPAQIQ QIQAQFIAQQ  120
QQRGMGLAGS FLGPRGTTPM KQYSGSPPLG AQSKLYRGVR QRHWGKWVAE IRLPKNRTRL  180
WLGTFDAAED AALAYDKAAF RLRGDQARLN FPALRRGGAH LAGPLHASVD AKLTAICQSL  240
QNPAAAEPES PKCSAASAST EGDNDSASAS AAGSPGAPVP GMEKLDFTEA PWDESETFHL  300
RKYPSVEIDW DSILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22151212163ATERF1
3gcc_A3e-22151212163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g58980.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1058771e-116AK105877.1 Oryza sativa Japonica Group cDNA clone:001-204-C05, full insert sequence.
GenBankAK1059911e-116AK105991.1 Oryza sativa Japonica Group cDNA clone:001-205-H01, full insert sequence.
GenBankAK2421211e-116AK242121.1 Oryza sativa Japonica Group cDNA, clone: J075147D24, full insert sequence.
GenBankAP0041191e-116AP004119.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1288_G09.
GenBankAP0149581e-116AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-116CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570628.10.0ethylene-responsive transcription factor RAP2-4
TrEMBLI1IF540.0I1IF54_BRADI; Uncharacterized protein
STRINGBRADI3G58980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.17e-43ERF family protein