PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g58220.2.p
Common NameBRADI_3g58220
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 341aa    MW: 37609.7 Da    PI: 9.1225
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g58220.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-27120170151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       krie++  rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  Bradi3g58220.2.p 120 KRIESSAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 170
                       79*********************************************9986 PP
2K-box57.94.4e-202012821899
             K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       + ++a+L++++ +    +R++ Ge+L+ Ls++eLqqLe++Le++l ++ ++K++ +leqi+elq+k  +l een++Lr+++ 
  Bradi3g58220.2.p 201 HSKYANLNDQLAEASLRLRQMRGEELDGLSVEELQQLEKKLETGLHRVLQTKDQQFLEQINELQRKSSQLAEENMQLRNQVS 282
                       345677777777777899************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-36112171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.707112172IPR002100Transcription factor, MADS-box
CDDcd002654.34E-39113186No hitNo description
SuperFamilySSF554555.49E-30114185IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-24114134IPR002100Transcription factor, MADS-box
PROSITE patternPS003500114168IPR002100Transcription factor, MADS-box
PfamPF003191.8E-25121168IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-24134149IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-24149170IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.251197287IPR002487Transcription factor, K-box
PfamPF014868.0E-18203281IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MFFERSPCLG GPAARPTRLA SCSLPLSFFL SSPFASPPSH RVASQTAPHR FVSRALVFPR  60
LSLPPTPPAA AAPSRARTPA SIRRFRCGSC VWEGSWEEID RSGCVGWRGA KMARERREIK  120
RIESSAARQV TFSKRRRGLF KKAEELSVLC DADVALIVFS STGKLSQFAS SSMNEIIDKY  180
STHSKNLGKA DKPSLDLNLE HSKYANLNDQ LAEASLRLRQ MRGEELDGLS VEELQQLEKK  240
LETGLHRVLQ TKDQQFLEQI NELQRKSSQL AEENMQLRNQ VSQIPTAGKL VVADTENVIA  300
EDGQSSDSVM TALHSGSSQD NDDGSDVSLK LALPCVPWKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18112185174MEF2C
5f28_B1e-18112185174MEF2C
5f28_C1e-18112185174MEF2C
5f28_D1e-18112185174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g58220.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693250.0KF469325.1 Brachypodium distachyon MADS-box transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288317.11e-164MADS-box transcription factor 22-like
SwissprotQ9XJ661e-136MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A0Q3JTP00.0A0A0Q3JTP0_BRADI; Uncharacterized protein
STRINGBRADI3G58220.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Representative plantOGRP60761120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-60MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]